Protein Info for PS417_27920 in Pseudomonas simiae WCS417

Annotation: type VI secretion protein IcmF

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1166 transmembrane" amino acids 7 to 29 (23 residues), see Phobius details amino acids 41 to 58 (18 residues), see Phobius details amino acids 441 to 462 (22 residues), see Phobius details TIGR03348: type VI secretion protein IcmF" amino acids 15 to 1164 (1150 residues), 1365.7 bits, see alignment E=0 PF14331: IcmF-related_N" amino acids 190 to 448 (259 residues), 325.9 bits, see alignment E=3.4e-101 PF06761: IcmF-related" amino acids 500 to 793 (294 residues), 300.4 bits, see alignment E=3.4e-93 PF21070: IcmF_helical" amino acids 934 to 1033 (100 residues), 39.1 bits, see alignment E=1.5e-13 PF06744: IcmF_C" amino acids 1041 to 1147 (107 residues), 110.9 bits, see alignment E=6.7e-36

Best Hits

KEGG orthology group: K11891, type VI secretion system protein ImpL (inferred from 99% identity to pfs:PFLU6013)

Predicted SEED Role

"IcmF-related protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UN02 at UniProt or InterPro

Protein Sequence (1166 amino acids)

>PS417_27920 type VI secretion protein IcmF (Pseudomonas simiae WCS417)
MKAFFSFMIRWVIPVLGLIALSLIIWFVGPLLDVLVPEGRRWALIILVFAVWIAYRVFRI
IQARRQAAEVMRSLAAETPADPNSVATAEELTTLRQRMDEALALLKKAKLGGDERRNLYE
LPWYVIIGPPGSGKTTALVNSGLHFPLAAQLGAGAVRGVGGTRNCDWWFTDQAVLLDTAG
RYTTQDSNSTVDKAAWLGFLDLLKKQRSRRPIDGAFIAISLSDLLLGTDAERAAHAAAIR
LRIQELYTQLGVRFPIYLMLTKLDLVPGFMEFFDNLSKEERAQVWGMTFALDDGKNTDSP
LAHLQSEFAGLEQRLNERLVERLQQERDPARRDLIYGFPQQFGALKDCLQSFLEGVFKPN
AFEERVLLRGVYFTSGTQEGSPIDRLIGAMAQSMNLDRQHLARQSGTGRSYFIEKLFTAV
AFAERGLVGVNPKVERRRKWIARGVLAATVALVVVVSSLWWVSYRANQAYIAQVDQKVAP
LGQTVQNLSPAQRDILAVLPLLNAVKNLAGDSPSWSEGLGLYQGDMLEAESASVYRKLLI
AVFAPRLVTRIEEQLHGGGNSDFLYEGLKAYLMLADSEHYDPDFIKAWIALDWDRNLPRD
LPADQRQALAGHLQSLFERHPPTARLDPRLIDDLRRQLQQLPVAQRVYDRVKRQKLPEGI
PDFRLNEAAGRDAALVFSRKSGKPLGEPLSGFFTAKGYRQAFLLSSLNQTGTLAEEQWVL
GHEQADQQNVVSLAADVRRLYFQDYQRQWDALLADIDFVPITSVAQAADVLRVISGPTSP
LKKLLVAVAKETDLQAEERQLAAKGVPVEGGVDKLKERLGSLLGQEQPAANAPAAADDPV
TAHFAELNSIVSKNEGEPAAIDGLLTDMNALYVQVSAMVGASGDALLGEAKNQAAAAATR
VSLNAERQPPLVQGMVKSVVNSTTNSMMGGVRNQLNAAWVSEVVNVYRQSLAGRYPMSPG
SARDATLDDFGQFFGVGGVMDNYFRKYLQPYVDTSAQTWRWQPGAAQKLGIAPGVLQTFQ
RAATIRDAFFRAGGTQPIVRFELKPVSMDPTITQFLLDLDGQQLSYDHGPSRPVAMQWPN
PGSIGVVRISIMPPSASGRSGVTLDGPWAWFRLLEQSDLTAGNSPDRFNLRLRVDGASIA
YELRANSAFNPFKSRVLSGFSLPERL