Protein Info for GFF5453 in Variovorax sp. SCN45

Annotation: Alkaline phosphatase (EC 3.1.3.1)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 664 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF05787: PhoX" amino acids 198 to 565 (368 residues), 58.8 bits, see alignment E=3.1e-20

Best Hits

KEGG orthology group: K07093, (no description) (inferred from 67% identity to reu:Reut_B5110)

Predicted SEED Role

"Alkaline phosphatase (EC 3.1.3.1)" in subsystem Phosphate metabolism (EC 3.1.3.1)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.1.3.1

Use Curated BLAST to search for 3.1.3.1

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (664 amino acids)

>GFF5453 Alkaline phosphatase (EC 3.1.3.1) (Variovorax sp. SCN45)
MLPLGGVAFLTACGGGGGGGQPFLPLPAPAPAPAPAAANFASAEFTGMAAPTLADAPAMA
TTAVGSTLKISFDNGSSTEYKLAYQPFFLTGDLVPDGKGGKILAGGYYDINNQPILDKSV
PANTRQFYSDSPDGTSLLTVPNAKVDGVKGKPVFAVVQFEYTTRDLAGNNTYGTLPSPIA
VLTLDQDQTTGKLSLVKYHNVDMSSAHGLWITCGASLSPWGTHLSSEEYEPDAVTAATTA
MFKAYSQNVFGDPAKANPYHYGHLPEITVNPDGTGSVKKHYCMGRISHELIQVMPDNRTA
IMGDDYTNGGFFMFVADKEKDLSAGTLYVAKYDAGYSIDPAAAATKLTWVKLGHATSAEI
EALANSLVATDILDVVYATQNGSSDATPLTPASAVDSTYTLMYCDGKANWVRLKPGMEKA
AAFLETHRYANLMGASMAFTKMEGTTVNIKDKIAYSALQNIQDSMVKDGKGWTAGTNIAL
PKKLSAGGVMAHNLTGGQKDTGGAAINSEWVPTQTRALLVGEDISADALGNTSNPDKVGN
PDNLKFSEKMRTLFIGEDSSSHVNNFLWAYNVDTKKLSRIMSIPAGGESTGLHAVDEING
WTYIMSNFQHAGDWGTGASKTPADGLHSKVYTKLEPLIRANYKERYAAAVGYLTADPVQP
KLSK