Protein Info for GFF545 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 202 transmembrane" amino acids 46 to 67 (22 residues), see Phobius details TIGR00730: TIGR00730 family protein" amino acids 6 to 179 (174 residues), 180.1 bits, see alignment E=1.7e-57 PF18306: LDcluster4" amino acids 12 to 119 (108 residues), 52 bits, see alignment E=6.3e-18 PF03641: Lysine_decarbox" amino acids 49 to 177 (129 residues), 133.7 bits, see alignment E=4.7e-43

Best Hits

Swiss-Prot: 43% identical to LOGL3_ORYSJ: Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL3 (LOGL3) from Oryza sativa subsp. japonica

KEGG orthology group: K06966, (no description) (inferred from 85% identity to xau:Xaut_4183)

Predicted SEED Role

"Lysine decarboxylase family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (202 amino acids)

>GFF545 hypothetical protein (Xanthobacter sp. DMC5)
MARIDSVCVYCGSATGGDPVFAEEARNFGRILAAEGVRLVYGGGGIGLMGEVASAVALAG
GSVTGIIPRFLMTRERAFAHEAEMIVVEDMHERKRLMFERADAFVALPGGVGTLEELVEQ
LTWAQLGRHKKPILILNTAGFWDPFVTLVDHMRGAGFIRSDTPVEMLTADRAEDILPRLR
AAAEKVPERALHAADGTIAGRM