Protein Info for GFF5437 in Variovorax sp. SCN45

Annotation: Amine oxidase, flavin-containing

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 444 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF13450: NAD_binding_8" amino acids 9 to 85 (77 residues), 38.6 bits, see alignment E=2.2e-13 PF01593: Amino_oxidase" amino acids 14 to 280 (267 residues), 57.8 bits, see alignment E=2.6e-19

Best Hits

KEGG orthology group: None (inferred from 90% identity to vpe:Varpa_5882)

Predicted SEED Role

"COG2907: Amine oxidase, flavin-containing"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (444 amino acids)

>GFF5437 Amine oxidase, flavin-containing (Variovorax sp. SCN45)
MTQPPRIAVIGAGISGLAAAHTLRDVAAITLFEASGYFGGHAHTATIELPRSHADATRVA
HGVDTGFLVYNDRTYPHLIQLFSDLGVETAASDMSFSVQATRDDGRPLEWSGNNLDTVFA
QRRNLFDARFLGMLRDLLRFNRLTTRIAVAGTEGELAQPLGEFLDANRFGAAFRDWYFLP
MMGCIWSCSTTQMLAFPVATMIRFCHNHGLIQIANRPQWRTVRGGSRNYVEKIVAGLPDK
RLNTPVRRITRTEHGVLLATDAGTERFDHVVLATHSDQSLAMLGDASPAEAAVLGAIRYQ
PNHAVLHTDAAVLPQRRSAWAAWNYERAAAGERESGRVCLHYLLNKLQPLPWEQPVVVSL
NPVREIQRSQVMAEYDYDHPVLDLAAIRAQAEVPALQGQRNTWFAGAWMGYGFHEDGLKA
GLAAAAGLRARLSSGDDAAARRAA