Protein Info for GFF5434 in Variovorax sp. SCN45

Annotation: FIG097052: Sugar transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 422 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details transmembrane" amino acids 29 to 48 (20 residues), see Phobius details amino acids 68 to 89 (22 residues), see Phobius details amino acids 100 to 120 (21 residues), see Phobius details amino acids 141 to 159 (19 residues), see Phobius details amino acids 165 to 183 (19 residues), see Phobius details amino acids 213 to 235 (23 residues), see Phobius details amino acids 247 to 265 (19 residues), see Phobius details amino acids 277 to 296 (20 residues), see Phobius details amino acids 302 to 329 (28 residues), see Phobius details amino acids 350 to 369 (20 residues), see Phobius details amino acids 381 to 404 (24 residues), see Phobius details PF13347: MFS_2" amino acids 3 to 401 (399 residues), 162.7 bits, see alignment E=1.1e-51 PF07690: MFS_1" amino acids 17 to 353 (337 residues), 53.8 bits, see alignment E=1.6e-18

Best Hits

KEGG orthology group: None (inferred from 88% identity to vpe:Varpa_5885)

Predicted SEED Role

"FIG097052: Sugar transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (422 amino acids)

>GFF5434 FIG097052: Sugar transporter (Variovorax sp. SCN45)
LRYGLLGLPLAFVALPLYVLLPNHYAREFGVPLATLGAVLLGARLLDALIDPLLGRLSDR
LHARSPRAVLGCGAVAAGVLLVGFGLLFFPQALVDPSNHVALLVAAAVLLALTYAGYSML
SIAHQSWGAMLGGDALQRGRIVGWREGLGLVGVVLASVIPTLAGLPAMVTLFGVLLAIGW
VLWTQAPRPVRGSAPHAAVDLRLPLRRPAFRRLLVVFVLNGIASAVPATLVLFFVQDRLR
APASLEPAFLGLYFVMAAASIPAWLRIVRRFGLARSWLGGMCMSVAVFAWAGAMGAGDAV
PFLVVCALSGFAIGSDLVLPSALLAGIIAEAGDQPHAGAYFGWWNFATKLNLALAAGLAL
PLLGLAGYVPGAREPGALRALSLAYCLLPCVLKVLAGASLWALVIRPAAAASQPVPVPKA
AP