Protein Info for GFF5418 in Variovorax sp. SCN45

Annotation: Type IV fimbrial biogenesis protein PilY1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1665 signal peptide" amino acids 1 to 37 (37 residues), see Phobius details PF05567: T4P_PilY1" amino acids 1142 to 1505 (364 residues), 244.6 bits, see alignment E=9.6e-77

Best Hits

Predicted SEED Role

"Type IV fimbrial biogenesis protein PilY1" in subsystem Type IV pilus

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1665 amino acids)

>GFF5418 Type IV fimbrial biogenesis protein PilY1 (Variovorax sp. SCN45)
MARSTSSNRSPFRLFHTVGLLAGAAALLLGQHLATAQDGGDTALAQTPLFVSESNPPLNM
LVMGRDHKLYYEAYNDASDLNGDGVIDVGYKPNQIDYYGYFNNNACYEYANNKFSPVAVA
TGAKKKICAGGTRWSGDFLNYLSTSRMDAIRRVLYGGMRVTDTTSSTVLQAAYVPRDAHA
WGKAYDPVRDGAVYNISDYAPLAQPASGTRHLFAVTTLGESDDNAIPRLRVLNDSKFQIW
DWVSKEGTAGQDVCLGGVQCAADAGSTFDMLPATVFQNLTIKTWKKTNNSTATPTSASQM
ITFFTSNGISTNLCGSSSISVIDTTGGNNNPFAGTNGCTHDNYLTEIAGEINIPAAGKYT
FAVDGDDAVEATIDGTTWGWYGGHGADRSQNGLQSHSKDITFATAGWKTVKFRHVEGTGD
DNWGLALKITRPASTITTNKIRVEACSSTDAALREASCKSYPNNGGTAIYKPTGLLHDFG
ENNKMYFGLLSGSYQKNISGGILRRNMSSFADEVNPQTGVFQTNVAGVVTNIDRLRLIGF
NGSQYNDCGWITDGPISGKTDPSMCAMWGNPVGEMMFETMRYFGGASGAHTQYNYGSGAK
DSASPLNLSKPDWISPYADKASGGGGYQHCARPVMTVLSDINPSYDTKLPGSRYQSIAVN
ADALGGFNVANEVQAIGAAEGIHGKNFFIGQSSSSNANGAPSVKTVDDLSWVRGLSPQEP
SKEGSFYSAGVSRFAANNAVFGNAKGKNRLMTYSVAIASPLPEIRFPVSGGRFVTISPFA
KSVTGFSIDPTRFAPTNQIVDYYVDRIANTGTADTNASINEGRPYAEFRINYEDVEQGAD
HDMDAISRYVVSLQANGSVKVDMVSEYAAGSIGQHMGYVISGTTQDGMYLEVRDKDTASV
YYELNTPPGRAPGYCVGRSSDSECINLPLSASRTFTASTATSSGSFLKDPLWYAAKYGMP
GRDPASVVGDPDNYFLVTNATTLKAQMTKAFNDILQNTNSVTAVAVDVPGGTLAAGADVY
RTRFEADGWVGDVIRESLTDTGTTGLSYVRKWSAAEVLSKRTASTRNILYAAAGTDTPTL
RPFTFSGINGQTADAAWLTALNKNPANNQVDSKAEQRISFLRGENDSFRVRKSLASGKSN
ILGDIVNSSPLRVKGALYRAGAADTLEGTGSNYAAFATGQAEKSEMIYVGANDGMFHAFR
ADTGDESFAFIPTAMRNNLNTLTAPDYGKKDGTPHRYYVDGTPVASDVYFGSAWHKVLIG
SLGAGGRQVFALDVTNPASPQLLWEFGADTVAGTNLNMGNSLPQPTIARLNDPAGGKGKW
VALVPGGYQGGNNSSGGGGASLFVLDISNGSVLRRLDLDGGMTAAELTASLPLGNGLSRV
TAVDNTRDGKVDVAYAGDLAGNMWRFDMSSGDISAWTVQKFFTAKDADGKRQAITAAPYV
TKHPTGKGDLVIFATGRLLTASDKSNLQRQTVYGVWDRYSDSGATAPTPLPTASKARSDL
QSQSFAELEAGSGNFSLTNNTVTWYKANATGKRDSDVEKWGWVVDLPRNGEKVIYDMTLY
GRGLFLSSVRTSEDPCAAGMGGTIYGIDPNGGGRTDYVVFDMNGDGVFNAADAMAGGQVN
GTETGAGKQTIRAERVFDPSANAERRVNHGLQFGRQSWRKQPPNS