Protein Info for PS417_02755 in Pseudomonas simiae WCS417

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 289 transmembrane" amino acids 7 to 28 (22 residues), see Phobius details amino acids 34 to 58 (25 residues), see Phobius details amino acids 66 to 85 (20 residues), see Phobius details amino acids 91 to 112 (22 residues), see Phobius details amino acids 119 to 139 (21 residues), see Phobius details amino acids 150 to 168 (19 residues), see Phobius details amino acids 180 to 200 (21 residues), see Phobius details amino acids 207 to 229 (23 residues), see Phobius details amino acids 241 to 259 (19 residues), see Phobius details amino acids 265 to 282 (18 residues), see Phobius details PF00892: EamA" amino acids 7 to 135 (129 residues), 67.8 bits, see alignment E=6.2e-23 amino acids 150 to 280 (131 residues), 71.2 bits, see alignment E=5.3e-24

Best Hits

KEGG orthology group: None (inferred from 98% identity to pfs:PFLU0570)

Predicted SEED Role

"Permease of the drug/metabolite transporter (DMT) superfamily" in subsystem Queuosine-Archaeosine Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7TUJ6 at UniProt or InterPro

Protein Sequence (289 amino acids)

>PS417_02755 membrane protein (Pseudomonas simiae WCS417)
MQYAYPLLAIFIWAGNTVVNKLAVGALFPAEIGFYRWLLAALLFTPFMIKPVIANWALIR
PNLGKVFILGVLGMAVYQSLAYYAASLTTATNMGIILSLMPLMALTAAIISLGQRLTYGA
LTGAVLSFAGVVVVVSAGSLDALLQHGVNLGDGMMLVATLAYAVYSTLLKKWQLRLPPLV
LLYLQVLVAVVVLFPLFLFSAKAGLGWANIPLVLYACLLASMLAPLAWMHSVKTLGPSRT
TLFFNLLPLITALIAAVVLKEELALYHLVGGLLTLGGVILSERWTTPVR