Protein Info for GFF540 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 541 signal peptide" amino acids 1 to 39 (39 residues), see Phobius details transmembrane" amino acids 323 to 343 (21 residues), see Phobius details amino acids 355 to 377 (23 residues), see Phobius details amino acids 390 to 408 (19 residues), see Phobius details amino acids 429 to 451 (23 residues), see Phobius details amino acids 462 to 480 (19 residues), see Phobius details amino acids 487 to 506 (20 residues), see Phobius details amino acids 514 to 534 (21 residues), see Phobius details PF00332: Glyco_hydro_17" amino acids 232 to 305 (74 residues), 33.6 bits, see alignment E=1.7e-12

Best Hits

KEGG orthology group: None (inferred from 84% identity to xau:Xaut_4421)

Predicted SEED Role

"putative beta (1-6) glucans synthase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (541 amino acids)

>GFF540 hypothetical protein (Xanthobacter sp. DMC5)
MPSSVRLPLVLALLVCGLIAGLWTYLGRPVSMPPSPLAAGEKLPCVSYAPFRDGQSPFQK
GLVIPETQIEEDFVRLAQITSCVRTYSIEMGLDKAPALARKHGLTMLLGIWLGPDADRNR
IELETGIRLAKENPDVVKAVVVGNEVLLRGEMSATELANVLARVKREVGGVPVTYADVWE
FWERNKGLTENVDFVTIHILPYWEDLPVSAEDAGPHVDEIRQRMAEAFPGKEILIGETGW
PSAGRMREDALPSPANQARVMHDVVALAKRQGYRVNVIEAFDQPWKRRSEGTVGGHWGVI
DADTRLPKFAWGQPVEDFPGWRMHIAVGILSVIAVFGSALAAARRREEPVQPLEWYAIAA
IALFGGATLGAALSALPLESLGLVGWLRNGLILAAAALAMVTMPAVIVRGQGLAPFSVAL
DSRRWPATSGAAIASAAVLALATIAVGSVAFELVFDPRYKDFPVFPLTALVAAVAAPLLV
RRADRDGAGLAELIAMWGLLVAGIYVPLNETLANWQAAWFGALCLVMAFTLWRVQAVQRR
G