Protein Info for GFF5396 in Sphingobium sp. HT1-2

Annotation: Mobile element protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 511 PF13007: LZ_Tnp_IS66" amino acids 32 to 99 (68 residues), 43.9 bits, see alignment E=6.6e-15 PF13005: zf-IS66" amino acids 109 to 152 (44 residues), 60.7 bits, see alignment 2.8e-20 PF03050: DDE_Tnp_IS66" amino acids 168 to 452 (285 residues), 320.3 bits, see alignment E=2.5e-99 PF13817: DDE_Tnp_IS66_C" amino acids 459 to 497 (39 residues), 62.2 bits, see alignment 8.2e-21

Best Hits

Swiss-Prot: 36% identical to Y4QI_SINFN: Uncharacterized protein y4qI (NGR_a01890) from Sinorhizobium fredii (strain NBRC 101917 / NGR234)

KEGG orthology group: None (inferred from 49% identity to bcj:BCAL2216)

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (511 amino acids)

>GFF5396 Mobile element protein (Sphingobium sp. HT1-2)
VSDRGSSPVDKDARIAELEAALAARDTLIDTLRFQLAQLRRLTFGQSSEKLSLQLEQLEL
TLEELEGESELADIRKVQADQRERPAPVRALPAHLPRAERRIEPEAGTCTCPSCGGALRP
LGQDSDEMLDVAPVQWRVIRTVRPKYSCRSCEQIVQAPAPVKAIARGKASFATLAHVVVA
KFDHHLPLYRQAEMMAAQGLDIDRSTLAGWAAQAAHLLDPIVSRIQEEGIKAGKIHVDDT
PVPMLMPGKGKTVQARLWTYVVDDRAAGASTLALAWYRFTPDRSGVHPQSELKDFTGLLQ
ADAYAGFDKLYRGNRIREVACWAHFRRKIFENHTTSPTSLTSNLLDRIAALYRIEEEIRG
QPPDQRRRHRQDRSRPQVNELRSVIDDALRHLSPKSNMAKALNYGRKRWDALTRYIDEGV
AEIDNNIAERAIRPVAIGRKNWIFAGSKAGGERAAAIYSVIETAKLNGIEPQAYIADVIE
KIAGDWPATRWDELMPWNWQECRQSKIAEAA