Protein Info for PS417_27450 in Pseudomonas simiae WCS417

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 411 transmembrane" amino acids 6 to 22 (17 residues), see Phobius details amino acids 42 to 63 (22 residues), see Phobius details amino acids 76 to 94 (19 residues), see Phobius details amino acids 131 to 160 (30 residues), see Phobius details amino acids 301 to 319 (19 residues), see Phobius details amino acids 325 to 347 (23 residues), see Phobius details amino acids 359 to 378 (20 residues), see Phobius details amino acids 384 to 402 (19 residues), see Phobius details PF04116: FA_hydroxylase" amino acids 80 to 213 (134 residues), 106.9 bits, see alignment E=5.5e-35

Best Hits

KEGG orthology group: None (inferred from 95% identity to pfs:PFLU5915)

Predicted SEED Role

"Sterol desaturase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U5N3 at UniProt or InterPro

Protein Sequence (411 amino acids)

>PS417_27450 membrane protein (Pseudomonas simiae WCS417)
MDFVPYAVPFFIALIVVELLADRWRGERNYRVADAINSLSTGVLSTTTGLLTKGVGLLTY
AFALKHLAVFDLPAQSVWTWVFAFVFYDFCYYWLHRMGHERNILWAAHSVHHQSEDYNLS
TALRQTSTGFLLSWVFYLPLAVLGVPLVVFISVASLNLLYQFWVHTRHVPKLGWYEWFFV
TPSNHRAHHAQNALYMDRNYGGVFIFWDRLFGTFQEEDDNEPVIFGVTTPLASWNPLWAN
LQFYAQLWSDARRTERGWDKLRIWFMRTGWRPADVKAKYPLAKHDLTQFRKFEVPLDVRQ
QIYIALQFAAYVGFGSYLMNVGEGLPTAALVLGWSAMALGLFTLGVALENRPWALKAELL
RLVLNVPLVWLAPLVGLWPASHLGWLGLLSYSLLSVIGLYCCRSRFTRLVS