Protein Info for PS417_27410 in Pseudomonas simiae WCS417

Annotation: outer membrane usher protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 825 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details PF13954: PapC_N" amino acids 47 to 170 (124 residues), 29.9 bits, see alignment E=7.6e-11 PF00577: Usher" amino acids 187 to 735 (549 residues), 261.4 bits, see alignment E=3.2e-81 PF13953: PapC_C" amino acids 744 to 803 (60 residues), 37.4 bits, see alignment 2.7e-13

Best Hits

KEGG orthology group: None (inferred from 94% identity to pfs:PFLU5908)

Predicted SEED Role

"Beta-fimbriae usher protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U8J1 at UniProt or InterPro

Protein Sequence (825 amino acids)

>PS417_27410 outer membrane usher protein (Pseudomonas simiae WCS417)
MPSTISQARSRILLGLATLWSLPGSSAAVGLGEGFDLAALTSLGIDPQVSEYFRSAARFR
EGVHVVGLRVNGTPLGLVDARFDYQGQLCFTPALLAKAGLVTPSKVLREGITPDQACHDF
VGEYPATMVRLRPSSDEVTLVVPTQSLRAPEWEGGSFSEGGAAALFNYDVLGFDTHARSG
SSRFVSAYTEAGFNLGNWIVRSRQFYVSDNGKTRTEQVNAYAQRDIAALQSTFQVGQIST
NNPIFGGVQLTGLQFFPDGQQRSGAGDSNVVVEGLAQSQSRVEVRQSGALIHSTLVPEGP
FRLTGLPLLNSTSDLDVSVIDVRGAKRSFVVPAASFLGGAPVEPGYYFSLGKVRETTLDN
QQSPVVAMGSGTWGLGQRSSLGFGLLSTDEYQSAGGSLSSVFFHQVTVGVRHNLSRDAQD
EVGGARSTLSLGIPLFANLDINLSASAQSRGYREVLDAGQASRGYDLDARFKRQYTAGLS
WADPSLGGFSLGFTRSSQFDGQSNDHLFASWNNTFNGVGVALIADAQVDATAPRSLEPIR
GGRRNDRLDEGTSVRLQVTVPLGTDRSMSTYVSRRGDRLDAGTALSERVNDYVNYEVGVD
RDMKEREQSVRGRVDVLPLYTRVSLGVDRDPSNTHYSGQLQGGIVAHEHGVTFSPYAVQD
TFGIVSVGDIGAAKVSTPQGPVWTDFSGQAVIPGLQAYSNNHLQVQTQSLPKRVDLKNGT
KVLAAGRGSVNILNFDVVKVRRLLLEAQDEEGRPLPQGAAVFGEDNNFVTSVVGEGMVFL
SDIDGPQTLTVSLPDAKSCRLQVNPEQEPDDDTLYETAPVVCHVR