Protein Info for GFF5339 in Sphingobium sp. HT1-2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 214 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details PF00805: Pentapeptide" amino acids 44 to 71 (28 residues), 30.6 bits, see alignment (E = 2.9e-11) amino acids 59 to 97 (39 residues), 51 bits, see alignment 1.2e-17 amino acids 89 to 126 (38 residues), 21.4 bits, see alignment 2.2e-08 amino acids 103 to 136 (34 residues), 20.5 bits, see alignment 4.2e-08 amino acids 124 to 161 (38 residues), 26.1 bits, see alignment 7.7e-10 amino acids 155 to 189 (35 residues), 21.7 bits, see alignment 1.8e-08

Best Hits

KEGG orthology group: None (inferred from 48% identity to azl:AZL_b04570)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (214 amino acids)

>GFF5339 hypothetical protein (Sphingobium sp. HT1-2)
MRIILSLLAASLAVPPATAQMLITNVEERPDPWIVNGCRIGPKASCPGADLRFADLANAD
LSGADLTGAKLARADLRHANLTGAKLTSADLDGARMSTAFMGGTRLEGASLRGTDLSFVR
AAKARFDRSDMTAATLEKALLKGASFQDARFINTDLMEAKFYEADLERAVMDGVQLRFAV
FQDAWMKDCRGCPTHWQNGDTVWQTEERERQRNQ