Protein Info for PS417_27260 in Pseudomonas simiae WCS417

Annotation: iron ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 538 transmembrane" amino acids 9 to 31 (23 residues), see Phobius details amino acids 54 to 76 (23 residues), see Phobius details amino acids 87 to 110 (24 residues), see Phobius details amino acids 137 to 159 (23 residues), see Phobius details amino acids 181 to 206 (26 residues), see Phobius details amino acids 227 to 252 (26 residues), see Phobius details amino acids 281 to 307 (27 residues), see Phobius details amino acids 324 to 347 (24 residues), see Phobius details amino acids 362 to 385 (24 residues), see Phobius details amino acids 405 to 426 (22 residues), see Phobius details amino acids 457 to 477 (21 residues), see Phobius details amino acids 511 to 530 (20 residues), see Phobius details PF00528: BPD_transp_1" amino acids 68 to 250 (183 residues), 52.1 bits, see alignment E=3.6e-18 amino acids 362 to 523 (162 residues), 28.5 bits, see alignment E=6.1e-11

Best Hits

KEGG orthology group: K02011, iron(III) transport system permease protein (inferred from 97% identity to pfs:PFLU5875)

Predicted SEED Role

"Ferric iron ABC transporter, permease protein" in subsystem Campylobacter Iron Metabolism or Iron acquisition in Vibrio or Transport of Iron

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UMN1 at UniProt or InterPro

Protein Sequence (538 amino acids)

>PS417_27260 iron ABC transporter permease (Pseudomonas simiae WCS417)
MAHPAQRRWYLPVFTVAALVLLPLSVLLLSWQSIDAQIWSHLWETQMPRLLGNTLTLVSG
VGVGVTVLGVSLAWLTSLCEFPGRRWLDWALMLPFAIPAYVLAFVFVGLLDFSGPVQTLL
REWFGTGLRLPRVRSTGGVIIVLVLVFYPYVYLLARTAFLAQGKGLMEAARVLGQSPWRA
FWHVALPMARPAIGAGVALALMETLADFGAVSVFNFDTFTTAIYKTWYGFFSLSSAAQLA
SLLLLVVMLVLYGERRARGASRPSNERPRGKALYRLRGFKAAAASGWCGLVFACAFVIPM
LQLVVWFWQRGRFDLDERYSGLIIHTLYLGGIAALITVSVALVLAFANRLAPTRAIRSGI
SLANVGYALPGSVLAVSIMLAFSYLDRELVVPLSGWFGGAGKPLLLGSLSALVLAYLVRF
LAVAYGPLENSLARIRPSLPEAARSLGVCGPRLFCKVYLPLLLPGTLSAALLVFVDVLKE
MPATLLMRPFGWDTLAVRIFEMTSEGEWARASLPALTLVLVGLLPVIELIRRSARQIG