Protein Info for GFF5311 in Variovorax sp. SCN45

Annotation: Cytochrome c-type biogenesis protein Ccs1/ResB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 706 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 63 to 83 (21 residues), see Phobius details amino acids 168 to 186 (19 residues), see Phobius details amino acids 633 to 651 (19 residues), see Phobius details PF05140: ResB" amino acids 12 to 689 (678 residues), 445.2 bits, see alignment E=1.7e-137

Best Hits

KEGG orthology group: K07399, cytochrome c biogenesis protein (inferred from 91% identity to vpe:Varpa_1218)

Predicted SEED Role

"Cytochrome c-type biogenesis protein Ccs1/ResB" in subsystem Biogenesis of c-type cytochromes

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (706 amino acids)

>GFF5311 Cytochrome c-type biogenesis protein Ccs1/ResB (Variovorax sp. SCN45)
MLRAAVELLSSMRFAIALLTVICIASIIGTVLKQHEPINNYINQFGPFWAELFRAARLDS
VYSAWWFMLILLFLVISTSLCVARNTPRILVDLKTFKEDIRAQSLKAFGQRAENRLGETP
EAAANRIGQLLVSGGWKVKLQQREATNGSRPTGAGWMVAARAGGAHKLGYIAAHSAIVLV
CIGGLLDGDLIVRAQTWFNGKSVFTGGGMIADVAPEHRLSASNPTFRGNILVPEGGQGSV
AILNQADGVLLQELPFSIELKKFIVDYYSTGMPKLFASEVVLHDRETGEQVPARIEVNHP
ASYKGVEIYQSSFDDGGSKVKLKAVPMAAAAKPFEVEGIIGGPSTEITNGKEKLTLEYAA
LRVINVENFADAGAMSSGADVRKVDLRHDIESRLGAANKVNKPKVLRNIGPSIGYKLRDA
SGQAREYQNYMVPVDTGDGQPVFLLGMREKPEDPFRYLRVPADEQGSMDGFVRMRAALAD
PDTRARAIERYIAKATDPKRPEMAEQLRVSATRALALFSGSERARADATTVGGWQAIAEF
MEINVPEAERERAGGVLVRILNDVLFEVLNLSREGAGLAALPNDEKSQAYLTQAVLAISD
AHFYPAPVAMMMTDFTQVQASVFQVARAPGKSVVYLGCLLLIIGIFAMLYVRERRLWVWL
TPDGNASETAATMAFSVNRKTIDSDREFEHLKHKLLALNKTEPETS