Protein Info for GFF5293 in Sphingobium sp. HT1-2

Annotation: Mobile element protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 985 transmembrane" amino acids 403 to 421 (19 residues), see Phobius details amino acids 908 to 926 (19 residues), see Phobius details PF13700: DUF4158" amino acids 12 to 168 (157 residues), 159.9 bits, see alignment E=5.3e-51 PF01526: DDE_Tnp_Tn3" amino acids 579 to 960 (382 residues), 462.8 bits, see alignment E=8.5e-143

Best Hits

KEGG orthology group: None (inferred from 95% identity to sjp:SJA_C1-04970)

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (985 amino acids)

>GFF5293 Mobile element protein (Sphingobium sp. HT1-2)
LARRRLVSLEIWARHYGAPLDEREIARHYTLTSDDLEIVGRRRGDATRLGYAMLMLYMRW
PGRALEAGEVPPAPVLAYVAQQLGVAPAAFADYAHRDQTRREHLVEIRRSHGFRIFDRNA
FREVVAFSVPIAQTIIHPGQMADVIVDELRRLQILLPSPSILEAVLRRARQQAEQLTYEV
LTNGLLPDTLLGLDDLLARRPGQVATWLSWMRNAPQSPAARNILRLIERLAYIRALGLDR
ARADMIPALTFDRLADEGSRITPQHLGELNALRRHATLAATGIRLEESLTDATLTMFDKL
LGSMARRAENRTRDKALKTVRELQGHLRTLTGSCRLLIDARSKGVDSLAQIEALDWQHFA
VAVEQAEVLGRPETVDRTAELIERHRTVKLFVGAFLNAFEFRGAGAVQGLLSALAIIAEL
YRTGKRRLPDRVPLRFVPPAWRPFVLRDGIVDRAAYELCALSQLRERLRAGDIWVAGSRQ
FRDFDSYLIPPATFAALREKGPLPLAIETDFERHIEERRTRLDTAIEQVTVLARQGELPQ
VKLDENGLIISPLKAATPPATEIARRAAYDRLPRVKITDLLLEVDAWTGFSECFIHRRSG
READDRNALLTVILADGINLGLTRMAETCRGASLRQLAHLHDWHISEAAYGEALGRLIDA
HRAMPLAALWGDGTTSSSDGQQFHAGGRGAAIGDINARSGNEPGVAFYTHVSDRYDPFAS
RVIAATAGEAPYVLDGLLYHQTGLTIEEHYTDTGGASDHVFGLMPFFGYRFAPRLRDIKE
RRLHLLPGQESGPLLAGMTAEPIALGHVAAHWDELLRFATSIRTGTVTASAMLRRLSAYP
RQNGLALALRELGRLERSIFMLDWLRDIDLRRRTQAGLNKGEARNALARALFFNQLGELR
DRRFENQTYRASGLNLLVAAIILWNTRYLEMALADIGTADEIARHIAPLGWEHISLTGDY
SWNVEDQPDPDALRPLRAVNSLLAA