Protein Info for GFF5288 in Variovorax sp. SCN45

Annotation: Uncharacterized protein PA4513

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 871 transmembrane" amino acids 13 to 36 (24 residues), see Phobius details amino acids 145 to 165 (21 residues), see Phobius details amino acids 190 to 216 (27 residues), see Phobius details amino acids 326 to 344 (19 residues), see Phobius details amino acids 350 to 370 (21 residues), see Phobius details PF03929: PepSY_TM" amino acids 11 to 372 (362 residues), 206.4 bits, see alignment E=9e-65 PF00258: Flavodoxin_1" amino acids 405 to 529 (125 residues), 87.6 bits, see alignment E=9.3e-29

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (871 amino acids)

>GFF5288 Uncharacterized protein PA4513 (Variovorax sp. SCN45)
MKFPSLRQLWFQLHWLIGITAGTVLIVIGLSGAVLSFREEIIDAINPHGRHVPVQAVPSL
TPPQLLAAARQAWPQRQVGTLALFAEPGAAARVIFAPPPGERRGETVYLDPYTGTAMPPL
AGAGFFEWVEALHRWLLLPREPGRVVAGVLAMGLLLLSLSGLYLRWPRRPLDWRAWLTFD
PALKGRSFLWGLHSVMGTGALLMYVVFTTSGLYWAFDALRDRVDAMAGHPRVAAQQARTA
PRMRNVARDDAAAVDVAPAWAAFERKARETGGWSEVILRVPSGAAPSVLFTWLDVAPPHE
RARNRMTVRLPGGEVTQDERHADKSAGGIFLAAIYPLHMGTYFGLPGRIAMMLAALMLPV
FSVTGWLLYLDRRRKKRAVRIEREALESAARPAGATEPAPARVLVAFASQSGTAEGIAMR
SAAALEGVGLPVTVASLARLDPEQLRHHEHLLIVASSFGEGGPPDTARRFAQRLAQVGGE
ALSHLRYGLLALGDRHYARFCGFGHALDHALVAAGAQSLFPMVEVDNGDAGALAVWRRHL
GAMPGARGDSVPDAMTVVPEEEPFVAWTLSGRRLLNPGSLGHPLCEIELMPAGQGGMPSW
RPGALVELLPRHAPEAVGALLRSASLDGDAVVRFQGRAVALHEALTRSAMPAPELLLSRA
PDAQALADALVPLASRRYSIASVPAEGRIRLLVRQARHESGLGLASGWLTVHAPPSAQVE
LRLLANPGFEPVADERPCIFIGNGSGYAGLRGHLRERMAQGFRRNWLLFGERHSAHDAFF
MDELAQWREQGLVARADLAFSRDQPERIYVQDRLREAASELQRWIGDGAVVFVCGSLHGM
AAGVDAVLEEVLGRPALEDLIAQGRYRRDVY