Protein Info for GFF5286 in Variovorax sp. SCN45

Annotation: Ferrichrome-iron receptor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 826 signal peptide" amino acids 1 to 33 (33 residues), see Phobius details PF07715: Plug" amino acids 172 to 270 (99 residues), 61.9 bits, see alignment E=7.4e-21 TIGR01783: TonB-dependent siderophore receptor" amino acids 174 to 826 (653 residues), 346 bits, see alignment E=2.4e-107 PF00593: TonB_dep_Rec_b-barrel" amino acids 345 to 795 (451 residues), 223.9 bits, see alignment E=7.5e-70

Best Hits

KEGG orthology group: K02014, iron complex outermembrane recepter protein (inferred from 77% identity to del:DelCs14_0701)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (826 amino acids)

>GFF5286 Ferrichrome-iron receptor (Variovorax sp. SCN45)
MHAHPSSPHPVRKALLCLFAATMALPIAAVAADPAESARAQNQAARTYRIDAGPLASVLG
RFAAASGVALSFDPASTRTLNSGGLQGSYTVRAGFAALLSGTGLEAVEGGAGEFTLRKSA
AAPEASAGEPGDADGTLPAVRVVARAAPAPADADDRYQPTPDASTLRTTAPVLEIPQVVN
VVPAQVIRDQRPRNIDDALTNVSGINQGNTLASTQDTIMKRGFGGNRDGSIMHNGMPLVQ
GRGMNAAAESVEVLKGPSSQLYGLMDPGGVINVVSKKPQLRQRTSLSLLGSGYAGGRDGT
GATLDTTGPIGENGLAYRLIVDHVDEDYWRNFGKHRETLVAPSLAWYGDDTQAVLWYEYR
KYVTPFDRGTALDPRTQRPLALPKTQRLDEPFNEMSGETHLGQLSVDHQFGGGWAGHLNL
SYNRETYDANQLRVNGINTTRGTLTRSNDATHGALSTDSYATAYVDGTVELGGMRHDLQF
GWDAEYRKIYRADLLRQATKSTFSYLFPVYGLEVPSSTVSASDSDQTDKLHNQSLFFQDS
IHLSDRWIAVAALRYQAWSQLAGRGRPFKVNTDTDGSKLLPRLGLIYKWTDTVSFYGSYT
QSLKPASTIAPLSSGYVLDASVKPEEAKSWELGAKFDMPGGVTGTVALFDIHKRNVLVSQ
FNDVTKLTDWRTSGAARSRGLEVDVAGQLSRNWSAIASYAYIDAKTTEDPLYAGNRLWNV
ARQTASLSAVYDFGQVFGGEGRLRMGAGAHYVGKRAGDSANSFVLPGYTTVDAFATYDTR
LYGKKVKFQLNVKNLFDKTYYPSAANAYFISMGDARQVSFLTTFEF