Protein Info for GFF5277 in Sphingobium sp. HT1-2

Annotation: Transposase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 277 transmembrane" amino acids 51 to 68 (18 residues), see Phobius details amino acids 83 to 100 (18 residues), see Phobius details amino acids 250 to 268 (19 residues), see Phobius details PF13340: DUF4096" amino acids 22 to 93 (72 residues), 84.2 bits, see alignment E=8.9e-28 PF01609: DDE_Tnp_1" amino acids 111 to 267 (157 residues), 128.8 bits, see alignment E=3.5e-41

Best Hits

KEGG orthology group: None (inferred from 83% identity to gdi:GDI_1469)

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (277 amino acids)

>GFF5277 Transposase (Sphingobium sp. HT1-2)
MAWTGIARDEHSRKGLRYPSDMTDREWALVAPFIPPAKHGGRRRSTNMREVANALLYLAS
AGCAWRLLPKCFPPVSTVRRYFYAWRNAGLFEVMNTLLVMNLREIEGREASPSAGIIDSQ
SVKTTESGGPSGYDAGKKVKGRKRHILTDTSGFLISILVHTADIQDRDGAVDVLKRICQR
FPWLRHIFADGGYAGDKLRTALAKAGNWVIEIIKRSDQAKGFEVLPRRWVVERTFAWLGR
CRRLAKDWEATIASSTAWAMIASIRMLIRRTARYCYA