Protein Info for PS417_26975 in Pseudomonas simiae WCS417

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 260 transmembrane" amino acids 6 to 34 (29 residues), see Phobius details amino acids 45 to 66 (22 residues), see Phobius details amino acids 77 to 98 (22 residues), see Phobius details amino acids 107 to 125 (19 residues), see Phobius details amino acids 143 to 165 (23 residues), see Phobius details amino acids 176 to 199 (24 residues), see Phobius details amino acids 211 to 230 (20 residues), see Phobius details amino acids 242 to 259 (18 residues), see Phobius details PF01925: TauE" amino acids 6 to 257 (252 residues), 197.6 bits, see alignment E=1.4e-62

Best Hits

KEGG orthology group: None (inferred from 98% identity to pfs:PFLU5817)

Predicted SEED Role

"Protein of unknown function DUF81" in subsystem ZZ gjo need homes

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UJ68 at UniProt or InterPro

Protein Sequence (260 amino acids)

>PS417_26975 membrane protein (Pseudomonas simiae WCS417)
MEFLLYLLLGACAGVLAGLFGVGGGIIIVPVLVFSFTLQGFDPQVLTHLAVGTSLATIIF
TSVNAVREHHRRGAVRWPIFVWMTVGILIGAGFGALTAEAISGPHLQKIIGVFALLVAVQ
LALDVKPKASRTVPGKLGLTVAGTFIGWASAIFGIGGGSLTVPFLTWRSVPMQQAVATSS
ACGLPIALASALSFMILGWHDPLLPAHSLGFVYLPALLGIALTSMVFARFGARLAHRLSP
RLLKRLFAGLLFCVGINFLF