Protein Info for GFF526 in Sphingobium sp. HT1-2

Annotation: benzoate MFS transporter BenK

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 442 transmembrane" amino acids 20 to 42 (23 residues), see Phobius details amino acids 59 to 78 (20 residues), see Phobius details amino acids 88 to 106 (19 residues), see Phobius details amino acids 113 to 134 (22 residues), see Phobius details amino acids 146 to 168 (23 residues), see Phobius details amino acids 174 to 195 (22 residues), see Phobius details amino acids 253 to 273 (21 residues), see Phobius details amino acids 282 to 305 (24 residues), see Phobius details amino acids 315 to 334 (20 residues), see Phobius details amino acids 340 to 363 (24 residues), see Phobius details amino acids 381 to 402 (22 residues), see Phobius details amino acids 408 to 427 (20 residues), see Phobius details PF07690: MFS_1" amino acids 27 to 334 (308 residues), 146.1 bits, see alignment E=2e-46 amino acids 297 to 433 (137 residues), 55.4 bits, see alignment E=7.3e-19 PF00083: Sugar_tr" amino acids 27 to 426 (400 residues), 123.1 bits, see alignment E=2.3e-39 PF06779: MFS_4" amino acids 38 to 196 (159 residues), 46.1 bits, see alignment E=6.8e-16

Best Hits

KEGG orthology group: K05548, MFS transporter, AAHS family, benzoate transport protein (inferred from 65% identity to hse:Hsero_1313)

Predicted SEED Role

"benzoate MFS transporter BenK" in subsystem Benzoate degradation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (442 amino acids)

>GFF526 benzoate MFS transporter BenK (Sphingobium sp. HT1-2)
MQGIDINRHIDEARFGNLHLKIIIACAILLIVDGYDVFIYGVVLPQLMDQWGLSAPQAGS
LASWALFGMMSGALFFGPLGDRIGRKTCITICFALFSVATFINGFATTPTMFGVLRFLAG
LGCGGLMPNAVALTNEYAPKRMRSTLVALMFSGYAVGGMAAAGLGIWLLPLFGWQAMFFA
AAVPLVLLPLVLRGLPESAGFLVRQGRQEQARAILQRLSPGQRLDGPLIQPQGAAAKTSI
AALFQHNRTLGTLSMWLCFFCCLLMVYALGSWLPQLMRSAGYSLGSSLSFLLALNFGGMF
GAIAGGRLADRFGLPQVVIAYFLLGAICISLLGLNGPMPVLYLLIFVAGAGTTGTQILLY
ASVADFYDLSVRSTGLGWASGMGRVGAIVGPMLGGVLLAAQLPMTLNFVAFAIPGLVSVL
ATLVFMLSRRQQANRESYALAA