Protein Info for PS417_26930 in Pseudomonas simiae WCS417

Annotation: FAD-dependent oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 377 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF01266: DAO" amino acids 6 to 367 (362 residues), 127 bits, see alignment E=2.6e-40 TIGR03364: FAD dependent oxidoreductase TIGR03364" amino acids 6 to 368 (363 residues), 447.1 bits, see alignment E=2.4e-138 PF00890: FAD_binding_2" amino acids 6 to 180 (175 residues), 23.6 bits, see alignment E=5.7e-09 PF13450: NAD_binding_8" amino acids 9 to 39 (31 residues), 24.8 bits, see alignment (E = 4.4e-09)

Best Hits

KEGG orthology group: None (inferred from 93% identity to pfs:PFLU5808)

Predicted SEED Role

"FIG00350678: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See U1UFK2 at UniProt or InterPro

Protein Sequence (377 amino acids)

>PS417_26930 FAD-dependent oxidoreductase (Pseudomonas simiae WCS417)
MTKHSDLLIIGAGILGLSHAFAAAKRGLKVKVFERSATPLGASVRNFGQALVTGQPPGSM
LELARESREIWGHWAQVAGLQLKRNGSYLFARTEAEEHLLEAFCEGRAKEHGYNVELLQG
AAIKALYGGQFRHHRAALHGKEDQQLYSREAIPALINYLAQELNVEFYFSTLVRDVEPGQ
LHSTAGTFRGEQIIVCSGHDYQTLLADAMAALNPSICRLQMLRARPAVNLNLQHALLTGL
SCVHYGAFADLPEAAPVQAHILQEAPHLHEHGIHLLISPTPHGELIIGDSHDYGSDASPF
NAEQVDDWMIELAEQTLGCKIQVVERWQGVYGSRGPGPFSFLRAAPGLSAALMHTGVGMS
VGPAMAERNITTLWGAA