Protein Info for PS417_26910 in Pseudomonas simiae WCS417

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 456 transmembrane" amino acids 69 to 92 (24 residues), see Phobius details amino acids 100 to 124 (25 residues), see Phobius details amino acids 167 to 193 (27 residues), see Phobius details amino acids 205 to 224 (20 residues), see Phobius details amino acids 252 to 277 (26 residues), see Phobius details PF11067: DUF2868" amino acids 142 to 439 (298 residues), 352.7 bits, see alignment E=1.2e-109

Best Hits

KEGG orthology group: None (inferred from 95% identity to pfs:PFLU5804)

Predicted SEED Role

"probable integral membrane protein NMA1899"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UMG3 at UniProt or InterPro

Protein Sequence (456 amino acids)

>PS417_26910 membrane protein (Pseudomonas simiae WCS417)
MTPLHTLWLTETVRLREEHAGPLEDLEANRLARTAGGDLPTRIQQRALHLAERDGLTVAL
TRWLQGARLALLLLAIVAVISGAGLAFAALGNGINPVNVFWALGSLLGLNLILLISWALG
LLFAGEHSASLGRLWLWLSEKLARDAKAAQLAPALLLLLQRQKLNRWAVGVLVNSLWLLA
LLSAMVILLTLLATRRYGFVWETTILGADTFVAVTQALGTLPALLGFNVPTVEMIRASGD
SALNIESARQAWAAWLVGVLLVYGLLPRLILALLCLWRWKRGRAALRLDLNLPGYSQLRE
RLMPSSERLGVNDAAPEQLHHVSGGVNELESDGALLVAIELDDQHPWPPKLPASVKNAGI
LDSRESRNKLLEQLTRFPPARLAIACDPRRSPDRGSLALIAELARSATATRVWLLQAPPG
QALDAERLGDWHTALQQLELPFADSAPLNWLETGHD