Protein Info for GFF525 in Xanthobacter sp. DMC5

Annotation: Ribosome-recycling factor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 187 TIGR00496: ribosome recycling factor" amino acids 13 to 187 (175 residues), 208.7 bits, see alignment E=2.5e-66 PF01765: RRF" amino acids 22 to 185 (164 residues), 218.9 bits, see alignment E=1.8e-69

Best Hits

Swiss-Prot: 93% identical to RRF_XANP2: Ribosome-recycling factor (frr) from Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2)

KEGG orthology group: K02838, ribosome recycling factor (inferred from 93% identity to xau:Xaut_4436)

Predicted SEED Role

"Ribosome recycling factor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (187 amino acids)

>GFF525 Ribosome-recycling factor (Xanthobacter sp. DMC5)
MTTGTFDMADLKRRMHGAVGVLRDELGGLRTGRASASLLEPITIEAYGARMPLNQVATVS
VPEARMLSVQVWDRGMVNAVEKAIRDSNLGLNPATEGQVLRLRIPELNQERRQELVKVAH
KYAEAARVAVRHVRRDGMDLLKKLEKDSEMGSDELDRLSKDVQKATDETISEIDQTLAQK
EKEILSV