Protein Info for GFF5233 in Sphingobium sp. HT1-2

Annotation: Ribosome-associated ATPase RbbA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 929 transmembrane" amino acids 577 to 597 (21 residues), see Phobius details amino acids 732 to 756 (25 residues), see Phobius details amino acids 762 to 780 (19 residues), see Phobius details amino acids 786 to 808 (23 residues), see Phobius details amino acids 813 to 837 (25 residues), see Phobius details amino acids 843 to 864 (22 residues), see Phobius details amino acids 875 to 893 (19 residues), see Phobius details amino acids 905 to 924 (20 residues), see Phobius details PF00005: ABC_tran" amino acids 28 to 176 (149 residues), 105.8 bits, see alignment E=7.1e-34 amino acids 293 to 436 (144 residues), 93.4 bits, see alignment E=4.9e-30 PF12679: ABC2_membrane_2" amino acids 562 to 894 (333 residues), 38.1 bits, see alignment E=2.8e-13 PF12698: ABC2_membrane_3" amino acids 580 to 918 (339 residues), 142 bits, see alignment E=6.6e-45 PF01061: ABC2_membrane" amino acids 731 to 876 (146 residues), 44.9 bits, see alignment E=2.6e-15

Best Hits

KEGG orthology group: K13926, ribosome-dependent ATPase (inferred from 64% identity to bvi:Bcep1808_6171)

Predicted SEED Role

"ABC-type multidrug transport system, permease component"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (929 amino acids)

>GFF5233 Ribosome-associated ATPase RbbA (Sphingobium sp. HT1-2)
MIPPAQILPEEAIRIESLSHRYGGIIALNEVSLSLPKGKTTALVGPDGVGKSTLLGLISG
VKKLQTGRLSVLGFDLTERRKREEFLSRVAYMPQGLGRNLYPTLSVRENIDFFGRLFGLS
AVEREAHMRRLLDATGLAPFPDRPAGKLSGGMKQKLGLCCSLVHDPDLLILDEPTTGVDP
LSRRQFWELVDAMCAERPDMTVLVSTAYMEEAERFGHLVAMDDGKVIAQGDTREIMRDAG
ADTLEAAYVRLLPQDKRPSGDALVVPAWQDKGEAPAIEAHDLTRRFGDFVAVDHVSFRIG
RGEIFGFLGSNGCGKTTTMKMLTGLLDATDGTASLFGRPIAPGDMETRMRVGYMSQAFSL
YEELSVRQNLVLHARLYRVPRQQAGELVSAALAQFELEAHADAVPAALPLGIRQRLQLAA
ACLHRPEILILDEPTSGVDPAARDMFWRHLIRLSRDEGVTIFVSTHFMNEAERCDRISLM
HRGRVLTVGAPTELTQRYDAQRLEDAFIAVLEKDNDEAPTASAHLPVDASVASSTPAAGA
RSTAPGRPRLPTAAGSWPGFAWAFARREATELMRDRIRLAFALIGPIILLCIAAYSISFD
VQNIRLAVLDHDRSAASRDLQLYFEGSRYFRVEPELASDAAADQALREASTKMVLDIPPG
FGRDLTAGRRPAVDVRIDGASPFPASNARAYAEAVLLRYAMDQLRSAQPFAVPDLSSTIE
PRFIYNQEFRSIYAMAPGVLMLCMILIPAMLTALGVVREKEIGSITNLYASPASLGAFLV
GKQMPYALLAMISFVTLILVTVFILGVPLKGSLPALLIGGFLFILSVTGLGLMISAFVRS
QVAAIFATSLICLIPSVNFSGLLYPVSTLTGPSHIIGLTFPSSWFQIVSLGTFTKGLGMA
SFGQAYLALMALAFLFVGGARLMLGKQEK