Protein Info for GFF5196 in Variovorax sp. SCN45

Annotation: L-arabinose ABC transporter, permease protein AraH

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 404 transmembrane" amino acids 34 to 51 (18 residues), see Phobius details amino acids 64 to 84 (21 residues), see Phobius details amino acids 89 to 107 (19 residues), see Phobius details amino acids 113 to 136 (24 residues), see Phobius details amino acids 143 to 164 (22 residues), see Phobius details amino acids 190 to 208 (19 residues), see Phobius details amino acids 228 to 247 (20 residues), see Phobius details amino acids 253 to 270 (18 residues), see Phobius details amino acids 300 to 321 (22 residues), see Phobius details amino acids 332 to 350 (19 residues), see Phobius details amino acids 356 to 378 (23 residues), see Phobius details amino acids 384 to 401 (18 residues), see Phobius details PF02653: BPD_transp_2" amino acids 61 to 395 (335 residues), 145.6 bits, see alignment E=8.2e-47

Best Hits

KEGG orthology group: K10547, putative multiple sugar transport system permease protein (inferred from 95% identity to vap:Vapar_1047)

Predicted SEED Role

"L-arabinose transport system permease protein (TC 3.A.1.2.2)" in subsystem L-Arabinose utilization (TC 3.A.1.2.2)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (404 amino acids)

>GFF5196 L-arabinose ABC transporter, permease protein AraH (Variovorax sp. SCN45)
MSQPEVNAMKPAVPVQEGAARLHAGFLKNNLREYGMLISLVAIMVLFQVLTDGTLLRPLN
LTNLLLQNSYVVIMALGMLLVIVAGHIDLSVGSVCGFIGALAAVLMVEYDWHFVPTAIVS
ILAGAVIGAAQGWFVAFRKIPSFIVTLAGMLVFKGLTLALLAGQSVGPFPVEFQRLSSGF
IPDPLGGDTLRITSLAVGALAAVALVFFKLRGRARLAAHGMETEPYAFFLVKNLFFAAII
LFFSYLLSTYKGLPNVLVVMAVLIVVYDFVTNRTTIGRRIYALGGNEKAARLSGVKTQRL
AFLTFVNMGALAALAGLVFAARLNTATPKAGLGFELDVIAACFIGGASASGGVGRVMGAV
IGAFIMGVMNNGMSILGIGIDYQQVIKGLVLLAAVFIDVYNKNK