Protein Info for GFF5192 in Sphingobium sp. HT1-2

Annotation: Mobile element protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 963 transmembrane" amino acids 806 to 824 (19 residues), see Phobius details amino acids 900 to 918 (19 residues), see Phobius details PF13700: DUF4158" amino acids 7 to 169 (163 residues), 187.7 bits, see alignment E=1.5e-59 PF01526: DDE_Tnp_Tn3" amino acids 570 to 956 (387 residues), 463.6 bits, see alignment E=4.7e-143

Best Hits

KEGG orthology group: None (inferred from 100% identity to sch:Sphch_4094)

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (963 amino acids)

>GFF5192 Mobile element protein (Sphingobium sp. HT1-2)
MPRRVTLTDRQREALLHLPVDQGELLRHYTLSDEDLGHIRQRRRAHNRFGFALQLCVLRY
PGRVLAPGELIPAQVSDFIAAQLGLTSDDLLLYAAREETRHEHLADLRRIYGYRSFSGRG
ARDLREWIAREAEAATSNEDLARRFVAECRRTRTILPGSSTIERLCADALVEAERRIEDL
IAHRITPTLSENLAHLLEDTVDGRVTRFVWLRQFEVGANSAAANRLMDRLEYLQRFDLPA
DLLDGVPAHRVTRLRRQGERYYADGMRDLPEDRRLAILAVCTLEWRSSLADVIVETHDRI
VGRLYRASERLCNTRIADEKAAVRDTLKSFAEIGGALLGAQDDGTALDGIIATGPGWERF
RTLVATASALTNVLAADPLSRVLDGYHRFRLYAPRMLRLLDMQAAPIATPLLAAVAMLRN
GIKVDPPVDFLRPNSKWHRHLRAEPSGDHRLWEIAVLFHIRDAFRSGDIWLAGSRRYGDL
KQLLVPPQAIEQTARLAVPLRPGEWLAERRARLDTRLKEFGRAARTGTIPGGIIENGKLH
IDKLRADTPEGAEDLVLDLYQQLPPARITDLLLEVDERTGFSEAFTHLRTGAPCSDRIGL
MNVLLAEGVNLGLRKMAAATNTHSFWELLRIARWHVEGSAYDRALAMIVEAHAALPMAAF
WGQGQSASSDGQFFLATEQGEAMNLINAKYGNVPGLKGYSHVSDQYAPFATQVIPATVSE
APYILDGLLMNDAGRRVRQHFADTGGFTDHVFAACALLGYRFAPRIRDLPQKRLYAFTPN
ATPANVRALVGGKINEPLIERNWPDILRIMATIAAGIVAPSQILRKLASYPRQNELALAL
REVGRIERTLFMIDWILDAGLQRQAQIGLNKGEAHHALKRAISFHRRGEIRDRSGEGQHY
RIAGMNLLAAIIIFWNTMKLGEVVNTRAASGTHIAPDLLAHVSPLGWEHINLTGEYRWPK
SLA