Protein Info for GFF5178 in Sphingobium sp. HT1-2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 442 signal peptide" amino acids 1 to 33 (33 residues), see Phobius details transmembrane" amino acids 152 to 173 (22 residues), see Phobius details PF00672: HAMP" amino acids 177 to 220 (44 residues), 26.9 bits, see alignment 7.3e-10 PF00512: HisKA" amino acids 228 to 291 (64 residues), 29.5 bits, see alignment E=9.6e-11 PF02518: HATPase_c" amino acids 336 to 440 (105 residues), 82.3 bits, see alignment E=5.4e-27

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (442 amino acids)

>GFF5178 hypothetical protein (Sphingobium sp. HT1-2)
MPRPWKTTFGLTALVSLAFVLATLVIGLLAYALTHEAMEVQLDHRTATETSALLERAGAG
GTPALAELIHQRDAGHSTASLGYILVDPQGRRLAGALDAQIPAKAGYFELLHYGKDGAIA
QALITDLPDGSRLLVAADRTVIDEMDITILKLFSASFAAMLLLAVGGAWTVGAVTRSRLR
RFDDAAQAIIGGDLTQRMPLDGSDNEFDGVAKSLNHMLDRNAALVENLRQVSSDVAHDLR
TPLTRLNNRLDEALAFSGDKRTRAIEAAIAESHELLEVFSAILRISEIEAGTLKRDFQEL
ALGDLVEDVVETYAPDFELSGHALHSTIHMGLRIRGDARLLSQLITNLLDNALRHTPAGT
TVALNLTASEAFVILEVCDDGPGVPATERDRLFSRFTRTEASRTTDGHGLGLALVSAVAQ
IHGGCATVLDKPGFAVEVRLAR