Protein Info for GFF5169 in Sphingobium sp. HT1-2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 387 PF13579: Glyco_trans_4_4" amino acids 13 to 166 (154 residues), 38.4 bits, see alignment E=3.4e-13 PF13439: Glyco_transf_4" amino acids 13 to 173 (161 residues), 46.4 bits, see alignment E=9.4e-16 PF00534: Glycos_transf_1" amino acids 199 to 336 (138 residues), 92.3 bits, see alignment E=5.5e-30 PF13692: Glyco_trans_1_4" amino acids 203 to 335 (133 residues), 98.3 bits, see alignment E=9.6e-32

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (387 amino acids)

>GFF5169 hypothetical protein (Sphingobium sp. HT1-2)
MRVLTFLHSFEAGGVERIALRLVRAWRGAGIEAPLFMGRSDGPMRNELARALEFHQPRQP
PFSTRRFETLWMMITLPAVIRRLQPDLLFCAGNSYTVVALAMKLLLGRRCPPIVAKISND
LERRDMPMPIRTLYRLWVRLHARFIDHFVGMEHAMEREISSAIHIPSRCISIIADPAIDQ
RQLETLRAGATGRRRQENEGLQFVAVGRLVPQKNFGLMLRAFAVAATTRDCLTIYGDGPE
RERLAALALQLGIEDRVRFKGHVPDPARHLTGFDIFLLSSNYEGVPAVIIEALGAGLPII
ATDCSSAMSELTQHGRLATLVPVGNLYDLAAAIAAARRMDQCEDASYSQAKRFTIEQACG
DYITCFKHVTYNSISENNCHPQAEVRS