Protein Info for GFF5145 in Variovorax sp. SCN45

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 432 transmembrane" amino acids 214 to 232 (19 residues), see Phobius details amino acids 252 to 271 (20 residues), see Phobius details PF13401: AAA_22" amino acids 128 to 276 (149 residues), 38.6 bits, see alignment E=6.5e-14

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (432 amino acids)

>GFF5145 hypothetical protein (Variovorax sp. SCN45)
MSELPVNIRIDLGVHDNENPLLRGLPQERTHSEWYQSLGEDPLKHFKLPSILMESHAELV
KDLYVPSTAAADVAMRLQSMLRKSLRTRDPRVGENRRHLFEMARLTKKTNLTDDLEELPK
LTEGAAGAIVQGPTGVSKTRSLECITRQLPQVIEHGENEACGWLSLKQLVWLRVFMPDDA
NRRTLYLTIIREIDRLLGTNYIALFKERTKNGPMLLLLLHILSIHRCGLIIIEEIQERNV
SSPVLGKEFVSTFLRLLNAGIPVVLVGNPLGMQKVLEFSQDLRRFSQGGIFDFYPAYAVD
DKDWSQVLVPQIWSWTIFSEPDEIPAADLVGLLFQRTGAILDVLTTYRRECLISALRRSA
KRVEQVDLSLAWGSAAMRPLHALGAAYADHNIDALMKWGDQPIAWLQRNWMAEESRRSMR
KKAIEHHASTSH