Protein Info for GFF5134 in Variovorax sp. SCN45

Annotation: Chromosome partition protein smc

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1156 PF13514: AAA_27" amino acids 1 to 204 (204 residues), 206.6 bits, see alignment E=1.7e-65

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1156 amino acids)

>GFF5134 Chromosome partition protein smc (Variovorax sp. SCN45)
MRLAELDLLAYGKFTDTKLPFPKAEHDFHIVIGPNEAGKSTVRRAITELLFGMEVRSPLG
FKHAQSDLRLAGVLEGGPSRLAFIRTKQQKSLRSMSDEVLQESYLAGTLGALTQETFEEL
HCLDHGRLLRGGQGIVDPKNSVSQILFQAASGLEDFAVIREALGERASALFAKTGKNNRF
AKASEKFTSAHRTLREVQVRTKVWVDTREALQAAEDALESERDRRRALELQRTAWDRARR
LAHLISALDQLQAEDAQRGEVTVFAPGAREVLESGIEQINAASATHLTREEDAIRAQTAF
DGIDTNEDILQESALITRLGALCGLHPNHARDLPLRRAEVNAWLADIIERSEQFGWGVSE
AEVRASLPQDKVVRSIDALLKSRGAYVAEERAARDTLAERQTTVDTLKEKLAASASQGPD
ALLVESLEMALPFKASDANLKALAAAAQSARTLARNALTSLGRPALTEDLLRSLRLPSLE
RVNAYRQGRQDVAQALELGRSLATQSQTTADGIALSLKQFERSHQVVTVAQVSDARRDRD
HHWAGIKAGSLSLTEGAPRLDTAIRLADELGDSRTRSEADAAEVQALRDQIERATQEQAR
HDGVVEQKGIELDALDARWRETAAAMGLEGMELDDLPEWLSLRDAALRAADTAEQKKGEC
DDAQEAARLAQEALAQAVSAAGLVVTGASGIAALCAIADNHVQAANVNRTRRLDLQQQLE
SAETALRVATTAKEAKGQALLEWNTKWEATLARANLTGLGGDIGEAEAAIRACEFIRQRM
ERVDTMRLERIETMEADLRTMQEAAATLTEKMAPELAGNAPEEVFGILNARLEEAKRGAD
RKSHAQKYLDDALRRRDDANSDLLQARRSLAPLLGIAGVDEPKLALPLIERWETSNKQQA
EISRIQKEIDSHSDGLPLSKIRQEVASHPADQAADQVLRLKDLLSDSDLKLTSLVTSQIQ
ARAAFDTINGGDKAAVAEAERHEALAEMSEVSEEYLQLATAGSLLKWAVDRYRDRKQGPL
LDQASEIFRDLTLGAFQKLRVDFEQTPPALVAYRPNSLAVKVSGLSDGTRDQLFLALRIA
ALELQSDQGTPVPFIADDLFINFDDRRSQAGLEALFALSASTQVIFLSHQEHLLPVVQKL
FPQANLLQLSADEVAA