Protein Info for PS417_26200 in Pseudomonas simiae WCS417

Annotation: conjugal transfer protein TraX

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 242 transmembrane" amino acids 43 to 62 (20 residues), see Phobius details amino acids 74 to 94 (21 residues), see Phobius details amino acids 101 to 117 (17 residues), see Phobius details amino acids 126 to 156 (31 residues), see Phobius details amino acids 163 to 182 (20 residues), see Phobius details amino acids 189 to 210 (22 residues), see Phobius details amino acids 222 to 241 (20 residues), see Phobius details PF05857: TraX" amino acids 17 to 238 (222 residues), 165.2 bits, see alignment E=1.1e-52

Best Hits

KEGG orthology group: None (inferred from 88% identity to pfs:PFLU5653)

Predicted SEED Role

"Membrane protein, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U7V9 at UniProt or InterPro

Protein Sequence (242 amino acids)

>PS417_26200 conjugal transfer protein TraX (Pseudomonas simiae WCS417)
MHGTGTLPVGHVRDGALDLLKWLALLSMVLDHLRYVGLSLDGLYVPGRLAFPWFCLAIAA
NLHRVRHAPVTGQWRYLGWLLVFSVISEVPYRLFIEDADTLNVLPTLALGLLVARGWQQK
ALFDRVLALIAVTIAAVFSTQLMFGLFGVLLPLAMLLVFRRPWYFSVLPGLVCVAANQWQ
ILLNSGTPVALSGLAACLIAPLAGLVLLRHAKDVTPPAMRRWAYALYPLHFLLLLLVRKI
IA