Protein Info for GFF5105 in Sphingobium sp. HT1-2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 377 transmembrane" amino acids 20 to 41 (22 residues), see Phobius details amino acids 181 to 204 (24 residues), see Phobius details amino acids 232 to 251 (20 residues), see Phobius details amino acids 261 to 285 (25 residues), see Phobius details amino acids 292 to 312 (21 residues), see Phobius details amino acids 345 to 372 (28 residues), see Phobius details PF12698: ABC2_membrane_3" amino acids 23 to 363 (341 residues), 120.3 bits, see alignment E=5.2e-39

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (377 amino acids)

>GFF5105 hypothetical protein (Sphingobium sp. HT1-2)
MSAFRRALTREVHHLRRDRWDLAGITLLPGFLIFIVAALFWQGPLRQVPLGIVDGDGSTA
SRAVIRALDASPLIRFGGYYPGEVDAVRAVRSGKIMGFAHIPAGLGESVARHREPVVRIL
YNGSFLTAGGQVARAAEEAVTEALPEIAANQLPNHAVPASRVRRLAVEATPLGNAPSSFE
WFLGLLIFPAVLHLIAACVCAMAIGRELKGKSLSEWARASGGVAPAMAGKMLPYVLAISG
WGLAWLLYLTLARGWRIEGSILLIACGQTLFYAATAAVAALLVAVTSETATALSASAVYA
GSALAYSGATLPLNGGNAFARTWSNVLPLTHYIALQMGQVSGQAVAAAVAPMVSLMAYVV
IAGGGALAFIMVRARRV