Protein Info for PS417_26115 in Pseudomonas simiae WCS417

Annotation: glutamine ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 241 PF00005: ABC_tran" amino acids 17 to 165 (149 residues), 131.2 bits, see alignment E=4e-42

Best Hits

Swiss-Prot: 55% identical to ARTM_BACSU: Arginine transport ATP-binding protein ArtM (artM) from Bacillus subtilis (strain 168)

KEGG orthology group: None (inferred from 94% identity to pfs:PFLU5636)

Predicted SEED Role

"Lipoprotein releasing system ATP-binding protein LolD"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See U1TPC6 at UniProt or InterPro

Protein Sequence (241 amino acids)

>PS417_26115 glutamine ABC transporter ATP-binding protein (Pseudomonas simiae WCS417)
MVQISGLNKWYGNFQVLHAIDLTVSQGERIVLCGPSGSGKSTLIRCISRLEVADSGVIRA
LDADLGKPSPARHKALREIGMVFQNFNLFPHMTVLQNCTLAPMSVRGFSRKRAEAHARHF
LDKVGIENQANKYPSQLSGGQQQRVAIARALCMEPKIMLFDEPTSALDPEMVKEVLDVIV
TLADTGMTMLCVTHEMGFARQVAERVLFLDAGRIVEDLPPEQFFTAPKSDRAQAFLAQIH
H