Protein Info for GFF509 in Sphingobium sp. HT1-2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 415 transmembrane" amino acids 20 to 38 (19 residues), see Phobius details amino acids 57 to 78 (22 residues), see Phobius details amino acids 85 to 105 (21 residues), see Phobius details amino acids 112 to 133 (22 residues), see Phobius details amino acids 144 to 167 (24 residues), see Phobius details amino acids 177 to 196 (20 residues), see Phobius details amino acids 233 to 254 (22 residues), see Phobius details amino acids 265 to 287 (23 residues), see Phobius details amino acids 294 to 312 (19 residues), see Phobius details amino acids 318 to 341 (24 residues), see Phobius details amino acids 353 to 377 (25 residues), see Phobius details amino acids 383 to 404 (22 residues), see Phobius details PF07690: MFS_1" amino acids 25 to 345 (321 residues), 108.9 bits, see alignment E=1.3e-35

Best Hits

KEGG orthology group: None (inferred from 54% identity to mgi:Mflv_1096)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (415 amino acids)

>GFF509 hypothetical protein (Sphingobium sp. HT1-2)
MLMETDKPGAATEWRRHYMLPIAAALGYATSVIHIYGLGPYIQPISDQFGWTRTQVTVGL
TLSTLVQAVFSVPIGLMVDRLGPRIFGLVGVLLTCGAFALLGTATGSPGQWYLLWALLAL
ATLPVQATIWTSAVATRFEASRGLAFAITLCGASIAVAIFPLIGSWLIGQYGWQRAAPIQ
AAIWAACSFPLIFLFFRGARDRRRGEAVAATAAAPAIGATLAEGVRSSIYHRLLLASLLF
TFTIIALVVHFVPILTDRGADPMRAAGIASVVGLCSIIGRLATGLLLDRFRGSLVGAGVF
LLPAAASLLLLGAGNNVALLIAAAALIGLTLGAEVDVIVYLTTQHFGLKTFGGLYGGLLM
ALSVGTATGPLGASAIFDRFGNYAPFLWITLALMVGSSLALASLPPPAFARPRGH