Protein Info for PS417_26020 in Pseudomonas simiae WCS417

Annotation: transcriptional initiation protein Tat

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 632 transmembrane" amino acids 23 to 42 (20 residues), see Phobius details PF05787: PhoX" amino acids 58 to 599 (542 residues), 596 bits, see alignment E=4.7e-183

Best Hits

KEGG orthology group: K07093, (no description) (inferred from 98% identity to pfs:PFLU5618)

Predicted SEED Role

"Putative phosphatase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See U1UZ15 at UniProt or InterPro

Protein Sequence (632 amino acids)

>PS417_26020 transcriptional initiation protein Tat (Pseudomonas simiae WCS417)
MSLLEENQATDLEQMVGLTRRRFIGAGALCGAAMFLGGNLLTRSALAVNAASASPLLGFT
SIAAATSDAITLPPGYSASVLISWGQPLSKSAPAFDPSGNGTAKAQEQQFGDNNDGMSLF
AFPGDDNRALMAINNEYTNYRYLFAHGGAPQSAEDVHKAQASEGVSVIEVRRKGDTWQFV
QDSRYNRRIHGNSPIRLSGPAAGHDWLKTSADKSGKKALGTFQNCANGKTPWGTYLTCEE
NFTDCFGSSNPQQTFDAGQKRYGVVAASKDINWHQHDPRFDIAKNPNELNRHGWVVEIDP
FDPQSTPAKRTALGRFKHENAALAETRDGRAVVYMGDDERGEFIYKFVSRDKINHKNPKA
NKDLLDHGTLYVAIFDAGDGNTDHPKGKGQWVELTHGKNGIDASTGFASQAEVLIHARLA
ASVVKATRMDRPEWIVVSPTDGQVYCTLTNNAKRGEEGQPVGGPNPREKNVYGQILRWKA
DADNHGASTFTWDLFVVAGNPGVHAGTPKGGSSNINPQNMFNSPDGLGFDKAGRLWILTD
GDYSNAGDFAGMGNNQMLCADPATGEIRRFMVGPVACEVTGISFSPDQKTLFVGIQHPGE
TGGSTWPEHLPNGKPRSSVMAIRRDDGGIVGA