Protein Info for GFF5045 in Sphingobium sp. HT1-2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 483 PF20308: TPR-S" amino acids 14 to 89 (76 residues), 36.5 bits, see alignment E=6.3e-13 PF13281: MAP3K_TRAF_bd" amino acids 34 to 156 (123 residues), 26.7 bits, see alignment E=2.9e-10

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (483 amino acids)

>GFF5045 hypothetical protein (Sphingobium sp. HT1-2)
MILPILAQIRRVARSGDTVRAWTMFGAAGLLPSRDSDALTLKGRLLKDRALRSEGAERAA
LLDEARQAYLQAASDCRATYPLINAATLAFLNDRPADAADLARQVLALLDSGDHVQETRY
WLAATSAEAHLLLGDEAAAQAALAQAMAAAPDAWEDHAATLRQFHEILTRQGRSTAILDP
LRPPPSLYFSGIIGLPDNEEEARGKIEEALDQIAPGAAFGALAAGADILIAECALFRGIQ
LHIVLPTSLDVFRQSSVGRFGDHWLARFDRLIDMADSLDAPDAITSLSNAAIDKGCEIAM
GLALRRADAFATQAIALHIGRASDQPAPAYRLWQSRTLPVRKIILEQSMPPSGDALPMAA
NKAVLASTTRLAPTMRESANGLHFQAFDDMATAMLQASLILRDWPDHGLALEYQTVMPND
PIDGEECLALLLAPAAPAGSICMPWPQAAAMSLQGPGYRFEIAGEVMTRQGDCPVGHYYP
PSS