Protein Info for GFF5036 in Sphingobium sp. HT1-2

Annotation: Uncharacterized sugar:proton symporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 462 transmembrane" amino acids 22 to 42 (21 residues), see Phobius details amino acids 64 to 83 (20 residues), see Phobius details amino acids 94 to 114 (21 residues), see Phobius details amino acids 120 to 141 (22 residues), see Phobius details amino acids 154 to 175 (22 residues), see Phobius details amino acids 187 to 206 (20 residues), see Phobius details amino acids 265 to 286 (22 residues), see Phobius details amino acids 302 to 323 (22 residues), see Phobius details amino acids 330 to 348 (19 residues), see Phobius details amino acids 360 to 383 (24 residues), see Phobius details amino acids 395 to 415 (21 residues), see Phobius details amino acids 421 to 441 (21 residues), see Phobius details TIGR00879: MFS transporter, sugar porter (SP) family" amino acids 24 to 454 (431 residues), 358 bits, see alignment E=4e-111 PF00083: Sugar_tr" amino acids 32 to 456 (425 residues), 355.7 bits, see alignment E=6.3e-110 PF07690: MFS_1" amino acids 34 to 310 (277 residues), 88 bits, see alignment E=9.1e-29 PF06609: TRI12" amino acids 74 to 218 (145 residues), 34.5 bits, see alignment E=1.3e-12

Best Hits

KEGG orthology group: None (inferred from 49% identity to aba:Acid345_0654)

Predicted SEED Role

"Arabinose-proton symporter" in subsystem L-Arabinose utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (462 amino acids)

>GFF5036 Uncharacterized sugar:proton symporter (Sphingobium sp. HT1-2)
LHSPSLSDHAAHRMAGPSDARVTGAIVLSAAGAALGGLLFGFDTAVISGTTSALQARFGL
SDGMLGFTVASALIGTVLGSLVAGAPADRFGRRAVMLAVAICYVVSSLGTGLAGSWGTLL
AFRFLGGLAIGAASVVTPIYIAEVSPARFRGRLVALNQLNIVMGILIAFLSNYLIANLAP
EQTAWRWMFGIVTLPSALFLAVSLLLPESPRWLAIHGRGPQALGVMKRLGFLDPTDELRH
IQEAEARLDRSIAPGLFQAAYARPVACAIAIAMFNQLSGINALLYYAPRVFELAGAGSDS
ALLQSIAIGGTNLVFTILALFLIDRFGRKPLLYTGSILCAVALLLVGYQLESSDPDGTLI
LVGLLGFIAAFAVSQGAVIWVFISEVFPSAVRGKGQALGSTTHWVMAAAITWAFPVFAAR
VGGWVFAFFGAMMLLQFIWTWKAMPETNGVALEDMDLGSAQA