Protein Info for GFF5023 in Sphingobium sp. HT1-2

Annotation: Heat shock protein 60 kDa family chaperone GroEL

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 541 TIGR02348: chaperonin GroL" amino acids 3 to 527 (525 residues), 860.6 bits, see alignment E=1.9e-263 PF00118: Cpn60_TCP1" amino acids 23 to 524 (502 residues), 265.4 bits, see alignment E=4.9e-83

Best Hits

Swiss-Prot: 92% identical to CH601_ERYLH: 60 kDa chaperonin 1 (groL1) from Erythrobacter litoralis (strain HTCC2594)

KEGG orthology group: K04077, chaperonin GroEL (inferred from 92% identity to sal:Sala_2079)

MetaCyc: 66% identical to chaperonin GroEL (Escherichia coli K-12 substr. MG1655)
Non-chaperonin molecular chaperone ATPase. [EC: 3.6.4.10, 5.6.1.7]

Predicted SEED Role

"Heat shock protein 60 family chaperone GroEL" in subsystem GroEL GroES or Staphylococcal pathogenicity islands SaPI

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.6.4.10 or 5.6.1.7

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (541 amino acids)

>GFF5023 Heat shock protein 60 kDa family chaperone GroEL (Sphingobium sp. HT1-2)
MAAKEVKFASDARDRMLRGVDTLANAVKVTLGPKGRNVVIEKSFGAPRITKDGVTVAKEI
ELKDKFENMGAQMLREVASKQNDKAGDGTTTATVLAQAIVREGSKAVSAGMNPMDLKRGI
DLAVGAVVRDLETHARKVSANSEIAQVATISANGDEEVGRILAEAMEKVGNEGVITVEEA
KSLATELETVEGMQFDRGYLSPYFVTNTEKLKVELEDPYILIHEKKLSNLQAMIPLLEQV
VQSGRPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTAGNV
VSEELGTKLENVMVGMLGRAKKVIIDKDNTTVVDGAGARSDIDARVAQIRAQIETTTSDY
DREKLQERVAKLAGGVAVIRVGGATEVEVKEKKDRVDDALHATRAAVEEGILPGGGIALL
RALKALDGLKAANDDQQSGIDIVRRALRAPARQIADNAGEDGAFIVGKLLESEDYNWGFN
AATGQYQDLVGSGVIDPAKVVRTALQDAASVASLLITTEALVAEAPKDDKGARAAMPEME
Y