Protein Info for GFF5014 in Sphingobium sp. HT1-2

Annotation: Periplasmic aromatic aldehyde oxidoreductase, molybdenum binding subunit YagR

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 287 PF20256: MoCoBD_2" amino acids 2 to 228 (227 residues), 153.1 bits, see alignment E=5.9e-49

Best Hits

Predicted SEED Role

"Periplasmic aromatic aldehyde oxidoreductase, molybdenum binding subunit YagR"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (287 amino acids)

>GFF5014 Periplasmic aromatic aldehyde oxidoreductase, molybdenum binding subunit YagR (Sphingobium sp. HT1-2)
LEVACATSDIGTGSYTVMTLVAADTLGLPPEQITAKLGDSDLPTAPVEGGSWGAASSGSA
MQLACQAVGKKLLKAAGKIAGEPLGDAKINDVLFEDGCLVLKDTPTVRVPFGDAMRAADL
AAIEEEATAAPRFGDMWKGLHKSKNTHSAIFAEVKVDEELGVVRVTRIVDAVAAGRIINP
KTARSQILGGVVMGMGMALHEETFSDHRLGRWMNHNFGECHVPVHADIHDIEVIFVDEPD
PEVTPLGVKGLGEIGIVGTAAAIANAIYHATGKRVRSLPITIDKILG