Protein Info for PS417_25675 in Pseudomonas simiae WCS417

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 318 transmembrane" amino acids 134 to 160 (27 residues), see Phobius details amino acids 166 to 190 (25 residues), see Phobius details amino acids 202 to 223 (22 residues), see Phobius details amino acids 245 to 269 (25 residues), see Phobius details PF05656: DUF805" amino acids 123 to 234 (112 residues), 81.3 bits, see alignment E=3.7e-27

Best Hits

KEGG orthology group: None (inferred from 96% identity to pfs:PFLU5551)

Predicted SEED Role

"FIG00954311: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U4M0 at UniProt or InterPro

Protein Sequence (318 amino acids)

>PS417_25675 membrane protein (Pseudomonas simiae WCS417)
MSDNRFKIVFDGALLPGVESTTAKLNLAELFKSDVEAIEKLFTGRPVALKRDLSRPDAET
YLTALKNAGVDARIEAEQPVAFSLAETHETDSGSFSRTAASPYAPPRSAVGDDLPEYATL
KVFTIHGRIGRLRYLAWTLVLTLALLVAGGIISTVSFAVATASPTAGTILGVLLGLALFV
ALVWVSVQIGVQRLHDLGWSGWLYFLNLVPLVNSVFPILLLVLPGNAGANQYGAPPPRNS
TAVKVLATLWLAFIPVMLAIVVTLGMNGYLNQLEANMDSSYESSSITSDEDADQAATVEE
DEAQSADEADEPVDSPEQ