Protein Info for GFF5009 in Variovorax sp. SCN45

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 258 transmembrane" amino acids 18 to 37 (20 residues), see Phobius details amino acids 49 to 74 (26 residues), see Phobius details amino acids 85 to 105 (21 residues), see Phobius details amino acids 117 to 137 (21 residues), see Phobius details amino acids 149 to 171 (23 residues), see Phobius details amino acids 180 to 202 (23 residues), see Phobius details amino acids 218 to 240 (23 residues), see Phobius details PF03707: MHYT" amino acids 61 to 116 (56 residues), 74.3 bits, see alignment E=2.9e-25 amino acids 125 to 182 (58 residues), 61 bits, see alignment E=4.4e-21

Best Hits

KEGG orthology group: None (inferred from 85% identity to vap:Vapar_0328)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (258 amino acids)

>GFF5009 hypothetical protein (Variovorax sp. SCN45)
MTPLVVGQLLTPEYTPGMVALSFLISFAGSLVALICARRMIGADGKPNLAVVTCAAVALG
GIGIWSMHFIGMLAYRLPVPISYNMPLTVVSLVAAILISGIALYMAGGRRHFSRSGWLAG
SLLAGLGVCVMHYMGMYAMNMRASISFDIATVGLSALIAVTAAAAALWLAFNLRKFTHQV
AAAAVMGVAVCTMHYVGMSAASMICTASAPADALAIGGSYMGLTVFGTAGAVLIFIYWVV
TGSSLDTPLAAARRPRPS