Protein Info for GFF5007 in Variovorax sp. SCN45

Annotation: probable membrane protein STY4873

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 407 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details transmembrane" amino acids 29 to 54 (26 residues), see Phobius details amino acids 383 to 404 (22 residues), see Phobius details PF04286: DUF445" amino acids 36 to 404 (369 residues), 367.4 bits, see alignment E=7.6e-114

Best Hits

KEGG orthology group: None (inferred from 93% identity to vpe:Varpa_0332)

Predicted SEED Role

"probable membrane protein STY4873"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (407 amino acids)

>GFF5007 probable membrane protein STY4873 (Variovorax sp. SCN45)
MKRVALGLLCGAAVLYAVASVLHAQHPAWGYVAAFAEAAMVGAIADWFAVVALFRHPLGL
PIPHTAIIPSNKDRIGAKLAGFICDNFLSTAQVLGKLREFDTAGRIAGWLARPESGRKLG
EWGVAATRYGLTAFDDERVRDFMGRAAAAGLEKIDLSRLTGQALDALTAGGRHQALLDDV
LQQVAGLLEGDEVQAHITEAIAREIKTLRYVGLDQVAAKLATRKIVAAVARTIGELAAEP
DHPMRRRFDHFVDDFVVRLKLDPDFQRRGEQIRAELIAHPALGDYLHGLWGELLAWLHDD
LGRDDSTIRKRIASMAGALGTRLQGDEAIRRWINEQIEAAAPLAIERYREDIRHYIEQRV
GEWNAQEMTVELERHIGRDLQFIRINGTLVGGLVGLLIHAVTQLLRG