Protein Info for GFF500 in Xanthobacter sp. DMC5
Annotation: Phthalate 4,5-dioxygenase oxygenase reductase subunit
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 42% identical to VANB_PSEUH: Vanillate O-demethylase oxidoreductase (vanB) from Pseudomonas sp. (strain HR199 / DSM 7063)
KEGG orthology group: None (inferred from 88% identity to xau:Xaut_4067)MetaCyc: 42% identical to vanillate O-demethylase reductase component (Pseudomonas sp. HR199)
Vanillate monooxygenase. [EC: 1.14.13.82]
Predicted SEED Role
"Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Vanillate O-demethylase oxidoreductase (EC 1.14.13.-)" (EC 1.14.13.-)
MetaCyc Pathways
- vanillin and vanillate degradation II (2/2 steps found)
KEGG Metabolic Maps
- 1,4-Dichlorobenzene degradation
- 1- and 2-Methylnaphthalene degradation
- 2,4-Dichlorobenzoate degradation
- Alkaloid biosynthesis I
- Benzoate degradation via CoA ligation
- Biosynthesis of alkaloids derived from shikimate pathway
- Biosynthesis of phenylpropanoids
- Biosynthesis of plant hormones
- Biosynthesis of terpenoids and steroids
- Bisphenol A degradation
- Brassinosteroid biosynthesis
- Carotenoid biosynthesis - General
- Cyanoamino acid metabolism
- Flavonoid biosynthesis
- Histidine metabolism
- Isoflavonoid biosynthesis
- Limonene and pinene degradation
- Methane metabolism
- Naphthalene and anthracene degradation
- Phenylalanine metabolism
- Phenylpropanoid biosynthesis
- Styrene degradation
- Toluene and xylene degradation
- Tryptophan metabolism
- Ubiquinone and menaquinone biosynthesis
- gamma-Hexachlorocyclohexane degradation
Isozymes
Compare fitness of predicted isozymes for: 1.14.13.-
Use Curated BLAST to search for 1.14.13.- or 1.14.13.82
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Compare to protein structures
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (319 amino acids)
>GFF500 Phthalate 4,5-dioxygenase oxygenase reductase subunit (Xanthobacter sp. DMC5) MSDDALSPVIVAKKTIEAENMASFELIPAEGGELPAFTAGAHVDVSIPGGLVRQYSLINS ESERHRYVIGVWKDANSRGGSKAMFQQVNEGDRLAVGTPRNRFAVPRDTKRALLFARGIG ATPILSIADHLKAKNIPFEFHYLFAGGSPGSFKSTIEASAFAANTTFYFEATEPRLNAAN LLGDRPDDTHLFLCGVDWWLDPIIASAQQKGFGVNRIHVERFTGKAPPPLLDKVFEVKIA STGKVIKIPGDRSVSTAMEEAGVKIPTSCEQGACGTCKVKVLEGEVDHRDKRLKPEEKEQ GWFLACVSRAKGDLLVLDL