Protein Info for GFF4990 in Sphingobium sp. HT1-2

Annotation: FIG01129245: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 326 TIGR03557: F420-dependent oxidoreductase, G6PDH family" amino acids 4 to 318 (315 residues), 434.1 bits, see alignment E=1.5e-134 PF00296: Bac_luciferase" amino acids 11 to 202 (192 residues), 139.2 bits, see alignment E=9.9e-45

Best Hits

KEGG orthology group: None (inferred from 52% identity to rop:ROP_10120)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (326 amino acids)

>GFF4990 FIG01129245: hypothetical protein (Sphingobium sp. HT1-2)
MPKFGYKLMTEEHGPKVLVENAIRAEKAGFDFVSISDHFHPWLESQGHAPFAWSVLGAIA
HATDRIGIATGLTCPILRYHPVIVAQAAATIAVMSDDRFTLAVGAGERLNEHVTGARWPS
VPERHEMLGEAIDIFRLLWKGGVHSWHGTHFVVDHAQLYDLPTEPIPIVLGVSGPSSVTL
AAEKGDGIMTTAPDGDLVKSYEAKAGNPGPRYAEAVIAYASSAEQGLDIAHDRFRFSAFD
WSVNSEVPSVQGFEAASQYVRPEDLASKVSAGPDVQAHVQLISQYVDAGFDHIVLTCPGD
DQAGFIAFFEQELKPALSRPEKEPSR