Protein Info for GFF4983 in Sphingobium sp. HT1-2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 941 PF00989: PAS" amino acids 35 to 142 (108 residues), 27.2 bits, see alignment E=1.2e-09 amino acids 162 to 269 (108 residues), 31.9 bits, see alignment E=4e-11 PF08447: PAS_3" amino acids 51 to 138 (88 residues), 68 bits, see alignment E=2.6e-22 amino acids 307 to 392 (86 residues), 70 bits, see alignment E=5.9e-23 amino acids 436 to 522 (87 residues), 42.8 bits, see alignment E=1.8e-14 TIGR00229: PAS domain S-box protein" amino acids 53 to 151 (99 residues), 30.3 bits, see alignment E=1.9e-11 amino acids 157 to 277 (121 residues), 33.2 bits, see alignment E=2.5e-12 amino acids 280 to 406 (127 residues), 41.9 bits, see alignment E=5e-15 amino acids 408 to 533 (126 residues), 31.7 bits, see alignment E=7.2e-12 PF13426: PAS_9" amino acids 55 to 142 (88 residues), 16.8 bits, see alignment E=2.4e-06 amino acids 173 to 271 (99 residues), 26.3 bits, see alignment E=2.7e-09 amino acids 305 to 398 (94 residues), 18.1 bits, see alignment E=9.1e-07 PF08448: PAS_4" amino acids 164 to 273 (110 residues), 70 bits, see alignment E=6.7e-23 PF00512: HisKA" amino acids 570 to 633 (64 residues), 37 bits, see alignment 9.8e-13 PF02518: HATPase_c" amino acids 676 to 796 (121 residues), 70 bits, see alignment E=8.3e-23 PF00072: Response_reg" amino acids 822 to 933 (112 residues), 52.6 bits, see alignment E=1.6e-17

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (941 amino acids)

>GFF4983 hypothetical protein (Sphingobium sp. HT1-2)
LDPIESDAPTLDELQAMVARARLDGDRLKLALAAGAIVGTWFCDVPADRFTVDEAFAEAF
GLDPATGRDGVTLEKIVTTAHPDDRSGLQRAIEDALDKGGRYAHQYRVLRADGQYLWIEA
KGHVVHDESGAPISFLGVLIDVGDRRRLEAERDSARALLTNFADAMPGVVYAKDRDGRLM
IGNHGTSELVGKVPQDYIGRTDLELLEDKQQAAAIMETDQRIMVSGRSEQVEENVDFPDG
RRAIWLSTKSPLRDLGGEVVGLVGTSLDITERKAIEASHREIEERYRLAIGATSDVIWDW
RFADGHVIWNEALGTRFGHVQEQTSAQWWLDHIHPDDRARIDESIHAVIDHGGSNWTDEY
RFRRADGSHAFVLDRGTVLRSDDGAPMRMIGAMLDLTERKAAEAALAASEERLRLATEAA
DIGLWDVDLVEDVLIWPARTKAMFGISPDVPVSMRDFYAGLHPDDLDATTAAFAAAADPG
QRALYDVEYRTVGKEDGIVRWVAAKGRGVFDDVRCVRVVGVAIDVTARKADEALLHELNE
RLELRVAQEVAERTKAEDALRQSQKMESVGQLTGGIAHDFNNMLAVVVGSLDLLTRRLGD
DDPRARRYVDSAMDGARRAAQLTQRLLAFSRQQPLKPESIDANKLVDGMSDMLRHTLPDI
QPETVLAGGLWRAFADPNQLENVILNLAVNARDAMAGGGKLIIETANCYLDSRYAEELIG
VPAGEYVMIAVSDTGSGMPQEVVARAFDPFFTTKEVGRGTGLGLSQVYGFVKQSGGHVRI
YSEVGEGTTVKVYLPRLLGAVEEVAGVAMDETLPRGESQELILLVEDEPGVRQFSFDALS
ELGYRVLEADGAAAALTLIDAHPEITLMFTDVVMPEVNGRKLADAARKRRPGLKILFTTG
YTRNAVVHNGVLDPGVHLIGKPFTVEELASAVRRAIEEDAG