Protein Info for PS417_25375 in Pseudomonas simiae WCS417

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 826 transmembrane" amino acids 370 to 388 (19 residues), see Phobius details PF13332: Fil_haemagg_2" amino acids 63 to 127 (65 residues), 27.2 bits, see alignment 4.1e-10 amino acids 132 to 274 (143 residues), 35.1 bits, see alignment E=1.5e-12 amino acids 206 to 276 (71 residues), 18.3 bits, see alignment E=2.2e-07 PF04830: DUF637" amino acids 391 to 563 (173 residues), 100 bits, see alignment E=1.3e-32

Best Hits

Predicted SEED Role

"Putative large exoprotein involved in heme utilization or adhesion of ShlA/HecA/FhaA family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7USH6 at UniProt or InterPro

Protein Sequence (826 amino acids)

>PS417_25375 hypothetical protein (Pseudomonas simiae WCS417)
MRVEDVDFSQGVIKIVRRADSPLDSRRNQPLVKTAQRVSAGRDVVIASQTEQDDYAYQRR
RISGTEQTILQHASTVEVGGHMAIEARRDIAVIASTVSAAKNLSVEAGENVSLISAANEQ
HEYSKGKKGNTKTTTQLDNVTQQTAQLNAGGNLVAIAGTDLTLVASKISAGNEAYIQAGE
ELKLLAAQDSHYSLYDMNKKGSWGSKKTQRDEVTQVTHVGSEIKAGSSMMLESGSNQLFQ
AAKLQSGGDIAIVSGGSVTFEAVKDSRQESHEKSKSDMAWNSAKGEGSTDETLRQTLMVG
QGQLAIRAAGKINIDLKQIDQKTVSQTIDAMVQAEPQLAWIKVAEANGQVDWRMVKEIHD
SWDYKQSGLGAAPALIISIVASIYLGPLAGAMASNFAVGTINGGGDIGAGLKAATSKDAI
KGYATQMVTSGVLAGIDTAVGGWNTDGALILNADGVNNPGYSKSMLDWNTVSDNVLRSTT
HALVAGSINTAINGGSLKDNLGAAAVSEGLDLTAAFGNKQVGDLAEYLKITPGSAQKVLM
HAVLGGALSSAKGGDFKTGALAGAASEGLTAFATEKLGNYLDSRFATDTQFRVGTAQLVG
VLAGALVNGDPATASWVAGNAKKYNDEFHIGGPAIAGAVSAGEKVLKEGGTPDQATAAMS
SHLRGDGFDGPMPANGLVQAWSIGVGLPLAAVEAPAVGIGGLVAGALISGGANFGYQLST
GKDVNYTDVSIAATVGGLTQGKGFWLTQGYGLSGAYLGSVIKGEDAKYSLLGSVLGTAIG
YKSGNVITGQLKPLIGNTASETSGAATGSVLSEIVSGGVSNMGSNK