Protein Info for PS417_02525 in Pseudomonas simiae WCS417

Annotation: iron ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 521 transmembrane" amino acids 23 to 43 (21 residues), see Phobius details amino acids 71 to 92 (22 residues), see Phobius details amino acids 104 to 126 (23 residues), see Phobius details amino acids 133 to 156 (24 residues), see Phobius details amino acids 177 to 202 (26 residues), see Phobius details amino acids 232 to 252 (21 residues), see Phobius details amino acids 285 to 307 (23 residues), see Phobius details amino acids 327 to 350 (24 residues), see Phobius details amino acids 362 to 383 (22 residues), see Phobius details amino acids 389 to 408 (20 residues), see Phobius details amino acids 437 to 459 (23 residues), see Phobius details amino acids 495 to 519 (25 residues), see Phobius details PF00528: BPD_transp_1" amino acids 86 to 248 (163 residues), 57.9 bits, see alignment E=5.9e-20 amino acids 341 to 505 (165 residues), 47.7 bits, see alignment E=7.8e-17

Best Hits

KEGG orthology group: K02011, iron(III) transport system permease protein (inferred from 95% identity to pfs:PFLU0527)

Predicted SEED Role

"Ferric iron ABC transporter, permease protein" in subsystem Campylobacter Iron Metabolism or Iron acquisition in Vibrio or Transport of Iron

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U9C3 at UniProt or InterPro

Protein Sequence (521 amino acids)

>PS417_02525 iron ABC transporter permease (Pseudomonas simiae WCS417)
MNPSLPAPALRGGFSPRPKRPSIWLLLPVLFLVGLSLLPLAYVGLKAWQAGWAEAVHLLW
RPYVFGLLRNTLALMVGVTVTCAVIGLSLAWLLERSNLPGRRIWGVILCLPFAVPAFVSS
FTWVSLSASFEGLGGAILVMSLSKYPLVFLPVAATLRNLDPSLEESARTLGLNRWGVFFR
ITLPLLWPSLLAGALLIALHMLVEFGALSIIGLQTFTTAIYQQFELEFSNANAAMLSAVL
LVMCLTLLWLELRVRGKGRHVRIGQGAARHAEQVRLGQWAPLGQGYCLALAIIGSGIPLG
MLGYWLAVGSSAAFPVAEIGEALLSSLALSLAGAALCLVLAVPVGLLVVRYKGRLAIWAE
RLPYLLHALPGLVIALTLVYFALHYVPALYQTSALLLIAYALLFLPLAQAPIRTALNKAA
PQLEDAARTLGASSFSAFCRVTLPIIFPALGAAFALVFLDAMKELTATLLLSPTGLNTLA
TAVWAHTSNVEFAAAAPYAALLILVSGLPVYVLTTRIYLSR