Protein Info for GFF493 in Variovorax sp. SCN45

Annotation: RND efflux system, inner membrane transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1052 transmembrane" amino acids 27 to 46 (20 residues), see Phobius details amino acids 349 to 370 (22 residues), see Phobius details amino acids 385 to 407 (23 residues), see Phobius details amino acids 413 to 436 (24 residues), see Phobius details amino acids 457 to 476 (20 residues), see Phobius details amino acids 487 to 510 (24 residues), see Phobius details amino acids 550 to 569 (20 residues), see Phobius details amino acids 886 to 907 (22 residues), see Phobius details amino acids 914 to 934 (21 residues), see Phobius details amino acids 940 to 959 (20 residues), see Phobius details amino acids 989 to 1008 (20 residues), see Phobius details amino acids 1014 to 1037 (24 residues), see Phobius details PF00873: ACR_tran" amino acids 19 to 1036 (1018 residues), 545.5 bits, see alignment E=1.2e-167

Best Hits

KEGG orthology group: None (inferred from 84% identity to adk:Alide2_1457)

Predicted SEED Role

"Probable transmembrane drug efflux protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1052 amino acids)

>GFF493 RND efflux system, inner membrane transporter (Variovorax sp. SCN45)
MSGSPANTHDKPAGFNLSKWALDHAPLTRYLMVVLMVLGAFAYFQLGQDEDPPFTFRAMV
VKTYWPGATAQQVAEQVTDKLERTLQEAPYADKIRSYSKPGESQIIFNIKDSSKSTEVAN
VWYTVRKKIGDMRATLPAGVQGPFFNDDFGDVYGVIYALESEGFSYAELKTLADDVRQQL
LRVKDVAKVDQFGVQDEKVYIEISQKRLAQLGLDFNAVLQQLGSQNAVESAGSISSPQDV
VQVRVAGQFTSVDQLRDMPIRGSSGSQIKLGDIADIHRGYVDPPAVKVHHQGKEVIALGV
SMAKGGDIIALGKALKATTATIDKRLPAGVKLAQVQDQPVSVASSVNEFVGVLIEAVAIV
LAVSIISLGLHKGGRFGWYIDMRPGLVVAITIPLVLAVTFLAMNYFGIGLHKISLGSLII
ALGLLVDDAIIAVEMMVRKMEEGYDKARAATYAYDVTAKPMLTGTLITAAGFLPIGLAKS
VTGEYTFAIFAVTVIALVLSWIVSVYFVPYLGTLLLKVKAHDPDAPPHEMFDSAFYNAFR
RAVNWCVEHRWATIGATVLIFALGIVGMGKVQQQFFPDSSRPEILVDIWFPEGTSFAANE
EVAKRVEKRFMEEAGVSTVSTWIGSGVPRFYLPLDQVFPQTNVSQLIVLAKDLKVRETLR
LKLPQLLAQEFPEVRGRVKLLPNGPPVAYPVQFRVIGPDPALLRGHADEVKAVLRDNPNM
RGVNDNWNESVKVIRLEVDQAKARALGVTSQAIAQASKTMFSGTTVGQYRENDLLIDIVL
RQAPDERQAISDIGNAYIPTSSGRSIPLTQIAKPVFTWEPGVMWRENRDYAITVQGDVIE
GLQGATVTTQLLPKLRELEAGWAAAGQGGYRVEVAGAAEESSKGSASIVAGVPIMLFLVF
TLLMLQLHSFSRSLLVFITGPMGIAGVAGALLVLNRPFGFVALLGVIALMGMIQRNAVIL
IDQIEIDRAAGVPAWDAIVESAVRRLRPIVLTAAAAVLAMIPLSRSVFWGPMAVAIMGGL
IVATVLTLLALPAMYAAAFRVKREPKAVPISV