Protein Info for GFF493 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Annotation: Cellulose synthase operon protein C

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1150 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details PF13432: TPR_16" amino acids 268 to 329 (62 residues), 27.2 bits, see alignment 2.1e-09 amino acids 349 to 411 (63 residues), 24.4 bits, see alignment 1.6e-08 amino acids 382 to 436 (55 residues), 19.8 bits, see alignment 4.1e-07 amino acids 601 to 656 (56 residues), 23.3 bits, see alignment 3.4e-08 PF13181: TPR_8" amino acids 298 to 327 (30 residues), 17.3 bits, see alignment (E = 1.9e-06) PF13176: TPR_7" amino acids 300 to 328 (29 residues), 16.9 bits, see alignment (E = 2.3e-06) amino acids 458 to 486 (29 residues), 17.7 bits, see alignment (E = 1.4e-06) PF14559: TPR_19" amino acids 466 to 523 (58 residues), 29 bits, see alignment 4.8e-10 amino acids 608 to 659 (52 residues), 32.2 bits, see alignment (E = 4.9e-11) PF05420: BCSC_C" amino acids 795 to 1129 (335 residues), 405.5 bits, see alignment E=8.7e-125

Best Hits

Swiss-Prot: 100% identical to BCSC_SALTY: Cellulose synthase operon protein C (bcsC) from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)

KEGG orthology group: None (inferred from 84% identity to cko:CKO_04973)

Predicted SEED Role

"Cellulose synthase operon protein C"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1150 amino acids)

>GFF493 Cellulose synthase operon protein C (Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868)
LLGLSLGMALTPLAGAATSAQQQLLEQVRLGEATHREDLVRQSLYRLELIDPNDPQVIAA
RFRYLLRQGDSDGAQKLLDRLAQLAPESTAYQSSRTAMLLSTPQGRQSLQEARLLATTGH
TEQAIASYDKLFKGYPPEGELAVEYWTTVAKLPARRHEAINQLQKINAVSPGNNALQNAL
AQLLFASGRRDEGFAVLKQMAKSSTGRSAASAIWYQQIKDLPVSDASVKALQDYLTQFSE
GDSVSAARAQLSEQQKQLADPAFRARSQGIAAVNAGEGGKAIAQLQQAVSARQDDSEAVG
ALGQAYSQRGDRARAVAQFEKALAMAPHSSSRDKWESLLKVNRYWLLIQQGDAALKANNL
AQAERFYQQARAVDNTDSYAVLGLGDVAMARKDNAAAERYYQQTLRMDSGNTNAVRGLAN
LYRQQSPQKAAAFIASLSASQRRSIDDIERSLENDRLAQQAETLESEGKWAQAAELHRRR
LALDPGSVWVTYRLSRDLWQAGQHAQADAQMRSLAQQKPNDPEQVYAYGLYLSGSDRDRA
ALAHLNTLPTSQWNSNIQELAGRLQSNQVLESANRLRDSGKEREAEALLRQQPPSTRIAL
TLADWAQQRGDNAAARAAYDAVLAREPGNVDAMLGRVEIDIAQGDNAAARAQLAALPASQ
ITSINMQRRVALAQLQLGDITAAARTFNRITPQAKAQPPSMESAMVLRDAAAFQAQTGEP
QRALETYKDAMVAAAITPVRPQDNDTFTRLTRNDEKDDWLKRGVRSDAAELYRQQDLNVT
LAHDYWGSSGTGGYSDLKAHTTMLQVDAPWSDGRAFFRTDMVNMDVGRFSTDADGKYDNN
WGTCTLEKCSGHRSQADTGASVAVGWQNETWRWDIGTTPMGFNVVDVVGGVSYSDDIGPL
GYTLNAHRRPISSSLLAFGGQKDASSNTGTKWGGVRANGGGVSLSYDKGEANGVWASLSG
DQLSGKNVEDNWRVRWMTGYYYKVINENNRRVTVGLNNMIWHYDKDLSGYSLGQGGYYSP
QEYLSFAVPVMWRQRTENWSWELGGSVSWSHSRNRTMPRYPLMNLIPADYQEDARDQTNG
GGSSQGFGYTARALIERRVTANWFVGTAVDIQQAKDYTPSHLLLYVRYSAAGWQGDMDLP
PQPLVPYADW