Protein Info for GFF4912 in Sphingobium sp. HT1-2

Annotation: 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 273 PF00106: adh_short" amino acids 11 to 204 (194 residues), 138.7 bits, see alignment E=2.7e-44 PF08659: KR" amino acids 13 to 178 (166 residues), 44 bits, see alignment E=3.5e-15 PF13561: adh_short_C2" amino acids 20 to 264 (245 residues), 160 bits, see alignment E=1.1e-50

Best Hits

KEGG orthology group: None (inferred from 43% identity to cse:Cseg_0314)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (273 amino acids)

>GFF4912 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) (Sphingobium sp. HT1-2)
MAKGLFDCTGKVTLVTGGNGGIGLGFAMGVAKMGGDIAIWARNTDKNEAAAKALREAGAG
RVETYQVDVASEEAIVDGYAKLLADFGRIDCVFANSGRASRSRSVLTLDAAEWHDLLAVN
LHGAFFTLREGAKAMVARAEAGEPGGSLVYCGSLSMFHGIAGINNYAASKGGMGAAVRGM
AAELGKYEIRANSIAPGYIKTGIGGDGEMSEEMKARMAAVDAHFSAKTPIHRPGTIEDFE
GIGAYLASDASRYHSGDTIVIDGGSLIYPPYAF